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Human element [ hs2589 ]


Position: chr17:17,469,603-17,474,582 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: PEMT(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGTGCGTGATCCCAGTAGAGttgggggtgagtgtgcctggttgcatggcttcctggggac
gcctcagggttcctcctccaggaaagagggcacccttcaccatccatgcctcacagcacc
aggccaggcccgggacatccacaggtgcctcagaccccacccctagtttccaagagctct
cagtctaggcaggaggcaaaacacacactttcaacctcagttcccggggctagggctcag
cactgccgcagggttcaggaaggcacagggaggagggcccagccatgtctgcacagagcc
agggctcagggaagccaggctggaagagccaaggcagccaggtgaaggcgggaaagctgg
cgaaggggaggaagcagaaagtgcaaaggcactgaagtacggagaagaacgcgtctgcag
aacagtggtggctcaggtggcccaagctctgggagataagtttcaggagatgcacccaac
tgggcgcaggggggcaggtcgcgaacgaacctcaccagccatgcttagcctgaaggccac
cagccgggtccacagaaaggtggaagtaggaggcccaacctactgggaatgcctaagaaa
agggaaagtaactaaggcagcctgggtcccctgcctcctctcctcagtgtgggagggatc
ccgagagatgtctacaccaaaccctactgcccagggccgcacgctgcctttcggttaggg
tgattctgctcacactagcagtgtccaatagccttcatcatgctgtaaatgccagaacca
aaaataaatcatccagggaagacacgcttgggtcccacccagccatctctggagtatgag
gaacctacagggagggatgggccggctcagtggaagagatcggctcagtggggatcctgc
ctgccaggctccaggtgggagtgcgctccctctcccctcccttttgttcctgtccatgtc
actcccagccatcctggcacaggctgtgagctgacccagttcgagacaccttgttgtaca
ctttgtcaccacgttgctcaggcaccacaattctaaagttagccctagcctgatagcaga
ggctccccaccaggccagtgccagcagcacacagagtaatgctgctgcccagctcagctg
ccattcagaggcaggcagtgccccaggggcagcagggctgttgccagctaaaagcccacg
tccactgcctggctctgaaagatcccacactcatgtgccgtggaacggcttgcacttgag
acccaacatcaaggggccaggggagtgagcgtgggcactggggacaaggcactgactgtc
cccagccatggagctgaagctagacctgccattcgttctgcaggagtccagctgtgagca
cagcccagacaggagcgggggagagctaggagggccacagtatcttaggtgacactggtc
tgaagagacaagagctgtgctcctagagccaaggtctcagtcaggcctgatgagccagct
ggctctgctcaaagaaaaacccttcttgtgccacaggctccgccagtaagcccagctcag
ctcagctttcccgcaagtgcaagaggccctggcagaggacgacgctttctggtccagaaa
cactggcttggagcccactggatatgcggccatgccctgggagccagatttctgagccag
atggaagcaagggtctcagacagtttggctcatgcccccatcctaacttctgacacacac
acactcacacacatgcacacactcacacacctacacacacacacacatgccaccatcctt
gagcagacagtccagattgcaggtatgcacttggggtcctccctcacaagccccaggccc
acctgtagtccaccttttgtctacactcatatccctttccttggcctcaactcctgccca
ccctgcccctatgactcctccaaaaagcccacgtgggccaagtgctgccctgcctatggc
ccaccatcacctcctccagcccccacgaccctgtctccccacgcattacctggttatgct
ctctccgtaactccttggttaataagttgtgagctttcttattaaccaaatgctgatttt
tctatgtaacatctaatgtccaatctgaccttgttaatccagtgccagcccaggagggca
gggtcccgtcccggcacagagctgccccagagccaggacttggtaaagcgcagggattgc
agcatttcagagctagatggggcctcagctgagcgtcctcactttacaaatggagaaacc
gatgcccaggaaggggatgtgaatgacaagggtacagggcctgggctgatcccatagcac
ctacaaggtcggctttcccggcacctggagggatcccttggggcactcagaaacgagcca
tagaccgctggctggggatctgaaaatggaaactgaggcagcagcagcagcaaactcaca
ctaagggtggtaggcaggtgagggagctgcaggtgaggaggtgactgaggtgaggcagga
gcacccacaccttttcttccttctcctcctcctcctcttcctcctcccaggagccaggag
aagcacacctcaccttgcccacagcgccacctaccgtctggccaccctggggtgcagctg
ctgccagtaccagccagcaggtcaaacatccaggcccaggaaaccccaggcccagccagc
ggcccagcgcagcaagtggactctcacctcccagaaaggaaaagctgcctcttcccaaac
aactctccagactacagtggccaactgtcctgttctgcccaggactgacttgggttccag
ggaaagagactctcaggctaaaagcaggaaagtccccggccagagggacaggtcagcgtc
ctgatacagacataaggcctgctgcccctctataggtatcctctgcagggccaagggctg
gggctttggtctggttgacagtgagtgtcagaacacctgtctgcagctgacctgtcaaat
gcctttcctctctggagcacatgtgcaggagccacccccggcccaatggagcgagaggtc
ttgggcagggtgcactgtgggagagaggggcctcagaggggaggagctgcacactgacct
tgaggatggacttgggtgtccccaagcaaagacctgcacatgagagccaggcacccaggg
agagcagaaagcagggtggccacgcagggcttggaaggggacaaacaaaggcaccaggaa
gcaccctcccaaggctggaggaaaccggcgtgaccccgtgtgcatctgccgtcttggcag
gattccttacagctccccttcaggtttacggggtcccagtgaggaagggaagtcagacac
aggcaactctgcctagaaatccttctaggttggaagtagggttccaacttgctatgtctc
cagcagctttgatgttggttacatgcaactggtcttcaataaagttaaaataccaaagca
tgtgcacactttgctcttgtaaataactgctcaaggcagctgctgtgcctcccatgctgg
ctccctcgggacaacacagggcatggcagggcagggcaagcaggggggctctgggagctg
gagtggcacaggctgcctatcttatcttcactgggatgccaggaatcgctgagcctgcta
caaatgactgctgctctttacctccatgcagtgctttatttcacagagtcggggtgtgca
tagaacctggcacaatggagcctcaccttgtccaccaggtgccactgcagaaaaccagtc
aatgggcaatccacgctcacaaagccaataaacactgcctggacatccatttctgccagg
catggtgctgggcacaggcactgagctacaacaggtgccctaccctccttgacacagaag
gtcaggcagcagctgccacccggagcactgcacatgccaggattggggacacagaagcag
agcaggctccgcttcaactctcttaggatgctcctgggaaggggacagtgagagacaaac
agtgacagcaggtatggcaggctgtgctgaggggtaggtactcagaacgcccaggcagcc
atggccctcaagggacatcaggcaatgtctggaaaccactcagatggcctgggcttgggg
tactactgacatctagtgggcagaggccggggacattgctggacacctgtagtgccaggg
atggccccaaaagtcagcaaccctgagtcagagagggcagggtgaggaggcatgagggag
gggacacctgacaaggaccactccaagctgcggtaacaaaggtctgtgggcagccttgca
caagagaagccagatcacccagaaaggcccaagacctgggatgactgaggatacaggtgg
gaggacgcctgccagaagggcctcccgggacaggggaaaagttccatttcctggaaaacc
tggggacctctgagcatggccctcaagggtggctagagaggagcagtggggagactggct
gcaagcagctgctgctggtgatctggcgggggtgatggcacgaagccaggtagagtccgc
gagggtacagatccgggggcaggtgagaagagggagtccatcctggtccttggaccactg
ccctggcatctggagtgatagggaaagaacagaacattggggaggtcttggcaggggctc
cctttggagactggagactcccacgtagggccacagtgcctggacccaaggtcctgaagc
cctgaggagtccaggccacagactgagactcagatgacagagggaaaagcctgtcagtcc
ctctgtgacaccttgatctttgtttcctgagcccttatcacagtgttcattacaaacata
tctgtgctctggaaggacagaggtcattcactctctgaggacacacacagtgcctggtgc
atggcaggttctcggtgactattcgctgagcaaatgaacaTCAGGTGGAGGAAGCAGAAT
Primer
(+)TGTGCGTGATCCCAGTAGAG
(+)ATTCTGCTTCCTCCACCTGA


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