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Human element [ hs2588 ]


Position: chr11:117,090,514-117,093,867 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: PCSK7(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGTTCAAGCTGGGGACAGTGgtgtgcacctatagtcccggctacctgggaggcccaggca
ggaggattgcttgagcacaggagttatgactgtgccactgcactccagcctaggtggctg
agtgagaacccatctttaaaaaataaaaaaagaatattttttaaaaaagaagctagagac
tgagttcaaagttgttatgggggaaaggtacagggctggtcctcagaacaggtctcacag
gtggacccttcctttgttagagctgaatctttgaccagagaaggacccaatagcagggca
gggcaaaggaaaccctaaccctcctggcctcctaacagaatatctggagaacagagacaa
agataataaaagttacttttgagggtgtggttgttggcaaaaggaggcagagataggaaa
gggctcccatccagtgcagataagggtttcccaactcttttcttttttcttatttttcct
tgtcgcctaggctggagtgcagtggtaagatcatagctcaccacagcctcgaactcctgg
gttccagcgatcctcctgcttcagcttcccatgtagctgggactacaggcgtgtaccact
gcaccacactaatattcttattttttgtagagacagcatctcactatgttgcccaggctg
gtctcgaactcttggcctcaagcaatcttcctgccttggcctcccaaagtgtcgggatta
acaggcatgagccaccatgggggggcctcccgatttttgctcctaatattcttgctccca
ttcctaaattctctatcccaactcccaactccaaacccttcaacccccacaaccaagcta
gacagaggaagtggccaggggagctactgggcccagctggagctgggacaacactgacgg
cactattcaaggaaatccaatttggcagctccgcgacaggggctggaatgatgtcggcgt
gaacacagggagtgtgttccagcaagagaggactgtgtccttgcccacccccgagccctg
catggactcagtgtctataaggcccgcctgcccggctctacagctctcaacaggacaagc
tgcctcactgctctgggccagatgccatgaaaccccttctctctgtgtggttctgaggtg
gggagcgagaatggggcaaggggaggcagtgactgcctggcatcgagctcttttggggct
gtcatcacccctggagactcagagggtttagctgaggcgggccctgcctaaatctgctcc
actctatggcacttggatcgttggcccatggtgtcagtgctaacaccggagaatttcttt
cttccaaacttctcttctgggtcagataccagggtggcgacttctgccaagagctgccct
ttctccactgtactcactgcttccctcccagctgttagagcagctgccaagagatgtaat
tttcacccagccatggcgcactcccagaaaaaaaagggaaaagcactctccaagtggttg
tctcaatgagagtgggagcctggtttatgcaagggagcgggttgattttttttcctgtta
aggaaacagccttgcagtgatagtctgaagtgtggctgtgaagcccacgaacttgtctat
ggtggcaggagccacaggcaggcattgaaaagtccagagaagctttgcttccccagggag
ccaaatggtgggaagcatatgcccccagcctctgccctcagaaagacagctctacccagc
tgccctggtcattgactagaaactggcaacaagaagtttccatagcaaggacattccaaa
gatgggaactctgctaaacacactctctcttcatttctgggcaaattacagttcagatgg
aagagggtggtgagggtgagaagctgaggtgagttaaaatgagaaaggccaggtacagca
gagcaagagtgacaattatgttgtagaaccttcttaggtccctggcctgggcagggcgag
ctgggttccctagagttctgctagagggtggagtttggtatgttcctgttcttcctccta
acccagcctggcctgcagtgggtgccctctgtgcacacagcccagcctctcttccctctc
tactttagtccactcccttttctcttctccctggggctgggaggagggggtagtaggggt
caactggcacagagccttggaacattgtgttgaccagaagtcatttattggcataacaaa
attttagttttggaaaataaatttgacccagcaggaagacaaagcagcctaattcccaat
ggccccagagagatctcccgactcagccactggagaaatttgataccacctggctccagc
ccagctcctgcctagagcctcctatgcccacactatatggttgcgggcaacagggacagg
cagggagctctaggaagatggtctagaggcctgccttaaacctgctgggatggcgctaag
cccagctgggtgtaggcgatcgtcttcaaattctttaaatgggttccacaggttagagaa
gctccatgaccctgctcgaatttcatttgctatggctccaattatagctccagagaaaga
gctctctctggtgttgacatgagacattcccccactcctcttcccactcatcccataaaa
acgacaaccagactagctttcctcctgaagatgcacatgaccagaactcacagtatttac
ctaagagctgaagggcaatggaattaggagttttttttaagtccacagaaattagcaaaa
gcccaaattttaccaaaggaagacactgcaaagaagttgtttgtgcatttccttgagtgt
gaaaaagttgtttaatccatgtgacacttagtttcttttttttttttgagaaggagtctt
gttctgtcacccaggctggagtacagtggtgcaatcttggctcactgtaacctccgcctc
cttgtttcaagcgattctcctgcctcagcctcccaagtagctgggattacagatgcccgc
caccacaccaggctaatttttgtatttttagtagagacagggtttcaccatgttggccag
gctggtcttgaactcctgacctcaagtgatccatccgccttggcctcccaaagtgctggg
attacaggagtgagccaccatgtttggccccatgtgacacttagtttctaaaaatatgta
tattcgtcctaaatccaaatttctaagataaaagcattcccaagatgtattcagagtccc
cgagtctactactccaagggtggcatgccttaagacatccagctctgtgggggaagagga
gcctgagtgttggggcggggaagcagggaacagtGAGAAGCGCTGTGATGTCTG
Primer
(+)AGTTCAAGCTGGGGACAGTG
(+)CAGACATCACAGCGCTTCTC


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