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Human element [ hs2577 ]


Position: chr15:44,476,548-44,480,858 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: PIN4P1 - CASC4

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGCCCAAGGTTTTCAGGAATctttaggttggagtttcaagatgtcattttatacaataca
gatttccatttgtttgtactgcctcaattaactaaatatacaacactcttaagtttaaaa
atgaacttaaagtacacatatcacattatgccttagtgtacatttacatacactatgaat
gcacctatttaatacctctcactaccaagagaaggtgtgaccatcacacaaagaatctta
ccagcaaaggtataactaagcagtgatggcaattagaaatggtgataaaagactctatta
aatgagaggctaatagtataaattagcataaagcaaaggagataataagagatgaacaga
agggctatcttgttcaggaaagatggcaagaaataaaattgtggaattcagaaagtgaaa
aaaaagtaaaattcttccacttcttttgtcattgtctttcagccagaaagtagcttatgt
gagataaatcattagtaaaaatagtccataatattttataatgacacactgaaagatctc
atttgcagcaagatagtatatcattatatctgtctctttaaaaataatcagactgaccag
tatacccaatattacaaattagaatatgggtaatatctccttaccataaaattagaaaac
agtttatagatgtacagtctgtaatgtggctattcatttaaacaaactttttaaaattat
ttaagataaatttaaaagtaagcaaagaaagtattaagttttcagattagctgtgctgct
tagttggttcagtgttttatgttctgtagctacaccaagcaaactcctctcctggttttt
ttaaaacctatttcacatgtactagaatctgaagctgggcatagtttgaagaagttgcat
tccagtactgggacttccttatgtttttatcagagtttcactgctcaacagccaaatttc
ttttgatagtataacttccaaatggcctcccgaagagctgaggggctattctgttagaca
gataagtgtatactgagaaattgcaggcttaatatgccttataacattccaggcatcatt
gccaatccatggagtccttctgacctacaaacctccaattccataataactttggggcct
ttagagtcttctagaggcaaggccaggcatggtggctcacacttgtaatcctagcacttt
gggaggctgaggcgggtggattgcttaaggtcaggagtttagaaaccagcctagccaaca
tggtgaaaccccttctgtactaaaaatacaaaaattagctgagcgtggtggtgcatgcct
gtaatcccagctactcaggaggctgagacgcaagaattgcttgaacccaggaggcagagg
ttgcaatgagccgacatcataccactgaactccagcttgggcgacagagtgagactctta
tcttaaaaaaaaaaaaatgctctagaggcaaaaaatctaaaagagggcaggctagatgct
ttctccatcttaaattacctctggaagtacatgagatccttatgtgaattcactaattct
gctttcttgtgttttttgtctgtttgtttgttttgagacagagtttctctcttgttgccc
aggctggagtgcaatggcgtgatttcggctcacccacaaccttcgcctccccagttcaaa
cgattctcctgcctcagcctccagagtagctgggattacaggcatgcgtcaccacaccca
gctaattttttatttttagtagagacagggtttctccacgttggtcaggctggtctcaaa
ctccagacctcaggggatccacccacctcggcctcccaaagtgctgggattacaggcgtg
agccaccgcacccggcctttcttgtgttatgatcaatgttcttacctgcttggttcaagt
ctaacaaaacaagaatcttagtggcacctcctgcctagagtatttggaatcctttggaaa
tcctgaagccaacttttccactcagtatcctcaaaattagactgaggcccagactacagg
cccttgggttaagtcagggtgtagagaaaaaaggctctgcacctgtctggaggtgaagga
taatttgcctgactaaggagtgcctggatggagtaccagactatgagggttcctaatgat
ttggctttttcctgctacaagttcactgaaagtggccagacatttgagtgtgccctaggg
catgcgggtttgatgtaccactatttatttcaggtcttgggcctgtgggcctttgctaat
ttttctggctcccacaataccacttcacagcaagcccccttaatctctccaataaagtgg
agtgtccgtattgtcagtcatcccctattcatcagtctttagactatcccttctttttct
ccttttccagagcaaaataacctattagcattggcattctgccgaacactgattgcccaa
atgccgaacagtgctttcttggaggttcccatccccaaagctctagcctggcattgtgtt
gagtgctaaaagtacaccctgtataaggctgggaacttcgaagctgtcaggggttcactg
gggaattcagagacgcaatcctcggtcctcaagagaagctatttttggtggccacttagg
tttgggaacagagatgctgaaatgtgccttttaggactccatgggtcacatttcttaact
gttaatgcacaattggggctgcactgtattcatcaaaggattttcaaacatcggctaaat
gttacaatttgataccctcttttttgtcagatgattaaactgatcctgaagagaagagtc
ctcttggaaataaaattcatatgtagttactgcagccacagaatgaagattgaaatctga
atccaccttttcttgacataatgccattgctttgtgaagaatcttaatttgtgttataca
attttagaattagatttaattcaacactagctttatgcattattagtttagattgattcc
tctctgcatgtcaagtatgattgaaatttactgacaggaattttccccaagcagatttct
gttgtttgactcaactataccagagtaagtcagataaacatactaaagaaaaaaactaaa
gactttacatttttaacttttccacttagaagtagtctgctgttaactcagcctctaatg
ctctttacgcatccccatgccatttttgcttttggcaattttttttttttttttaggaga
cagcgtttccatctgtagcccaggctggagtacaatggcacaatcatagctcattgtaac
ctcaaactcctgggcttacaaaatcctcccacctcagccccctcatgtagctaggactac
aggtatacaccaacatgccagcctaaattttaaattttttgtagagacaaggtcttgcta
tgttgcccaggatagactcaaactcctggcctcgagggatcctcctgccttggtccccca
aagcactgagattataggcataaaccacagtgcctggccctgcttttggcaatttttcat
aacctggttcaaatttcatctcctttgaaaaacaattattaattttggaatccctcccca
tttcccaaactccaacccaaatctgcattgccacaacatatccccttgtcttagctccaa
attccatgatgctttatagtttgttatttacgtgtttgcaatccctaagttgtaagccct
tcgacaacaggggccttgacttttcctttcccctagtgcgtcaagttgtgaacaaaattt
atttttaaaaaatatacaaatatacaataatctactgtttttaggtcaggagagacaaaa
aatactaaccaataaatacaacagcatcaaactggtataatgacgcactgcagaatcttt
agactcctacccacttgaaaataggtatgcatatctgtagacaacctagcatttaccttg
caagggaagagaatctattaagacaattcaggaataaatcaaaagttagaaatgtgagat
tccttcttcacctctccctctccctcacattttacatccagtcaatcaacacttgtccat
tttacctactaaatatctctgtaacccagtagtagtgattctcaaacctcagcaagccta
agaatcacctggaagacttgttaaacagactgctgaactccatccccggagtttttgatt
cactaggtctgggatggggtcaagaatttgcatttctaacaagtacccaggtgatatgga
taatgcctatctaggggccatactttgagaaCCACTGCTTTATCCAATCCC
Primer
(+)AGCCCAAGGTTTTCAGGAAT
(+)GGGATTGGATAAAGCAGTGG


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