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Human element [ hs2575 ]


Position: chr2:221,966,861-221,971,455 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR4268 - EPHA4

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGCAAATGCAAATCACATTGagaaaaaaattcaggtatctacattgcaagtataatcaaa
taggaaaagttccagctctcaattttgctgctgtaactatgatcccatagtttgatacat
gatccataatctactcaacactgagtaaatatactatgaattttattatttatgccagta
ggcattaaaattccatcttttttttaccctgccagcattgattacaacacaaggacacac
acatacatacacacactctactatggagcagctttagagctttaagaataatttgggctg
ccttggaataccagaagccctagaaaaccagcaactacactggaagatcttgaataacac
gggtggttgtctagaaaaagctacaggctctgaagtcaggaataaatctaggttagtatc
ttgactctacccttcagcaatgtttccccttaagcatatctgatgacatctgtaagctct
agtctaaaagagtgccactaatacctaattcacaaatctgcccatgagaatggaatgatc
ccatatataaactgcttaacagtgactggcacaaagcaagctcctcaaaatacttagttt
cctgctattttcctctccttgacaagtgcttcttctggtgaatctccagggggttaagtg
agcatggatacactcctgagaatttcaaaatccttgggatttttttttttcctcctgaca
gtcagtactgttggctggtttggaacctcctagtgaattttctttttctcaaatcttgga
gtatttttggagtttatagatcagtgtcctcccaaaatggctcagcctgacctaccccca
gcctgtctccaacactcagactgtgttttcttgaaacgtgcgatgctttcctgttccaac
tacatgttcctattcaatcatccattcattcaacaagtatttaccatatgccaatcctgt
actgggatacaaggtgactaagacaggcttggttccaccttcaaggagatcatgttcttg
cagaggacacagatgaaaagtaagagggcacataaatgctttaattataactgataccgt
ggcaagtgctgcgatgggggctctagcagagaacagaagtttaagtatcggggcagtggt
taccacctgacatagggcatcaaggaaccctccttgaggagggatgagttaggcagaggt
gagctgcatagggagtgagagacctcaggcaggaggaacccagagaggttgttcaggagg
acctctgaaataaaaactattggcaacagggcactttgtctccctcccctccccttccct
tccctttctttcctttctttctttcactttccttttgaggcagagtttcactggcagtca
ggctagagtacagtggtgtgatctcagctcactgcaacttccacctcccaggttcaagtc
attctcctgtctcagcctcccaagcagctgggattacaggcacccaccaccatgcccggc
taatttttgtatttttaatagagatggtggggggggggtggggttcaccatgttggccag
gctggtctggaacgcctgaccatattcttgtttctagattcaactccattcttacaatcc
tgaactcctagctgaggatttaattgcatatataatcttagatctctgtgacttccacct
tatttatttatttatctattcattttaaattttctgtctatatgtcaagaggtctactta
ataaactagattcctttccttttaactgaaaaaaattagagaggagtgctgcctggagcc
ctgcctccttggcgttgtgctctacttttttatctacacaggatttgtgtcaatttgttg
gtcttacaaatgctcctattgtggggaggaaaccatgggctgaacacaagggctgcctga
cttcccagtttcactccaggaggcccacgtcacaccagcttcttcttgatgctgtagaca
cagtcacaaggtgtccacatgtgtcttcctcacacccatccgctgggaaacaggactctc
cttcctgctctgcagggtggaaaataggaccccaggcagtcgctcccttggagatgggtc
ccacactccatgaagctcagcatgggcataagagctgtctggctgcggtggctgcctgtt
ttcagcaggggtcttcagccagcattttctccaggagggtagcactgagctttcttccag
ctgatggctctggaaggcaccacaagttctttttggcgcattttccactttcctcctctc
ctcccactcccctctctctctcctcaccccacacagatcctgtgctgattgactgccatc
gccaggcttctgtaccaggcaatcaatcaaaagagaccttcccacgcggaacagccgccg
cccctccaccagactgctgcctctgacatttcctgcgtgcctggactgagcctgtttgga
aggctccagccccctcctatcagtctgggcactcagggctctggcagcagctgccgctct
gaatgttgacaccctgccacgtcaacactggccgggccgatgttccttcacactcatctg
ctgagcccaaacttcccctgctggcgggctctccctgtttgaatgggctcccagtcagaa
agggctccctgaagccttagctccttgaagctcgccccttgcagccttccggctagagga
tgtggctgttggatcagctcagtgatccttggttcacaaaaaaagaaattcagttcaatg
tggcctttcccaaaccccctcaaacagcgttctgtgcagattgagcctgctggccttggc
attgtccttccgacttgatttttcagactatctttcctcttgtctgtgagaataccatgg
ggctcaaggacctgaaggaattggtgcatgtatttcatttgaactttgctgaagcttttt
tattttaagccaagtgcttcctctgctgtctagaaaaaaaaaaaaaaaaaaagaaagaaa
agaatccttctcttgccgtcttttttgcccacacagatagccgcttctcatttttctggt
tccaactttcaggtagttgtatactaattgcaactaattcttgaatgtagactaattagg
aaatacagaaaactacaataaggtaaattttaaaaacctccttaggccgggcgcggtggc
tcatgcctgtaatcccagcatgttgggaggccgagaaggatcacttggggtcaggagttc
gagaacagctggccaatatggtgaaaccccgtctctactaaaaatacaaaaattacctgg
gcgtggtggcgggcgcctatgatcccggccactcaggaggctgaggcaggagaattgctt
gaatccgggaggcggaggttgcagtgagccgagatcacacccctgcactccagcctggat
gacagagacagactccatctcaaaaaatacataaataaattaaaaaaaaaaagaaaaatc
cttcctatctaaggagcaagagataataatgattaacatgacaggatatatccttacagt
ttagttctctgcattatacatgcaaagaataaacacacatggatgacttttctatgtaca
ataaaagcaccatcacttgacacatctcagaaccatttctgatttaatgttttatgaatc
ttaaaggcaggattactctttgacccaccaatttccccctagaatggaaaagtacatcaa
agtgtatgtactaggttgttcatcaccaccattatcatattagctccaaattagggacaa
tttaaattcccagcaataagagattggttaaatagattgtgggataactgtgcaatgtaa
tactaggagaatataaaaaatggtgacatacatatatacataaatatatatacacaaaca
tgggcatggaacactactaataaaaagatcataaattagtatgcataatactttacatgt
atgcatctatctcactttggaagatgatatccaaaatattaataatatttatctctggcc
gggtgttttgtgagtaatatatgactttagattgtctgattatgttagaattcttgtaat
gaactcttatgcttgcgttaaaaaagttaataggagaaaatatagtagagatgatttttc
catatcattgtttttctcaaaaatgactgttaatggttcgctaccaccatgtgtttattc
atttccctatctcaactgccttattgtatactgaggatgggagtgggagggaatgaggct
tagagacaagaagtacctgactaattaggaacaagcctgggctagaatccaagcctctgt
ttcaaaggtctaaatcctatgctgctttccagttgttatagatctaggagtcactgatat
atcctacaagtatgctgtgtgtatgtgtgcgtgtgtgtatgtaacacatatacacacaat
attttcatattatttttaaagggagttgaagttggcgcataaaatggttatacttttcca
gttccctattggcttccctttgaacttggaaaccatttcctacttgaacctcatctcaat
tttctctacaccagtTGTTCTCCAACTGAGGTCCC
Primer
(+)GGCAAATGCAAATCACATTG
(+)GGGACCTCAGTTGGAGAACA


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