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Human element [ hs2574 ]


Position: chr16:89,398,798-89,404,255 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LOC100287036 - LOC101927817

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AAGTCCCCGAGGACAGAGATgccttacagctccacacgtccctccacaacggcagcacct
gtacccgcagctctggggagaaatgacacctgcaggccaagacaaatgcaagaaaacagc
ctcgtctgctcactgattctcaccaacttcctctataaaatgaggacaagaacccattct
cctaaaggattttgtggggattaaatgaaaaagcactatctaaatccaagttatcatcac
tgtaatggctttagaaaaaagcaaacgacaaacacaacgagagaggcgctgagaccaggc
agggctctcctccggcagggcctggtctgcactgccctctctgaggaaagtgccccgctg
ccctgacctccctagtttcacacctccacacctccaaggaggttatcctggtacaactga
gaaagcaagcaattcccttagaaacgtccatttctttcctttatgctcaaatgttttatt
actccttagggctgctttgttttttaacgcaagggtccacagttgagaacgtagttacaa
actcaagaaacgagctgcaacagaacagcggggctgctccacgcttctcagccattttcc
catcctgtgcacccggggaatttcacacgtggtcccccagagtgacagggaacccccagg
gaagaagggcccctgtggggcatgcagaaaaacgcctgccccctggtgtgaggtcacaga
ctcagtggccaagctcaacaatgctctgggaactccagtcaaagatgcatcacaactttt
gggtcatgcctaaggtcaattccagaatcattttagcatgttaaacagacactgaaaata
aaacatattttattttttaaagcagctttaggttcacagcaaaattgagcatgaagtaca
gagggttcccctgcacccccgggctcagcatccccacgagagtggccgtttgttacagct
gagacccccctggacacagcatcatcacccacaggccgcacgacctcagggtccaccggg
tgctgtgcagtctatggttggacgaacgtatcctgatgtggacccaccgttgtggtatca
tacagagtagtttcactgccccaggtcccccgtgttcctgctgcacaaccctccgtccct
ccctctccccagcccctggcgtcactgatctttgtgctgtctgcacagttttgccctttc
ctggatgtcagagtcggaaccctacagtgtgtagtccttggagacgggctgctttcactc
aggcctggcagctcgtctgtttttagggccttgtaatagtctgtcgtctggatggacctt
ggttgactgatccattcaccctctgcaggacatcttggctgcttccaagttttggcaatt
atgaataaagccattttgtgaaagtgaaataatacagaacaggaaacattagggggcact
gcacaccatcacagaaagggacggtattattctgtgagtatgttcccagtatgtgggcgt
gtgttgtgaacagagagataaactactttctcaccactggaagcagtcaggacaattcaa
atgctggcctaactggttaagagccctcaatctgtggtcagatatatctaagtttctcaa
tctataaaatacagaaataaggccaggtgcagtggctcaagcctgtaaaacaagcacttt
ggaaggctgaggtgggtggatcacttaagcccagttcaagaccagcctgggtaacatgat
gaaaccctgtgttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaacagagagagagagaaa
gaaagaaaaaacactgttcccaagctgcgggctcaggacaatgtctgatgcctggcctag
ccctcatcaatggccttcacaatccctgctgactgggagtcaacccccagtgagtgtact
gccaatacggccaagtttctgaagttggtgacatgtgagggtaccccaagactgaacaga
aacaacctcctctcaggttctgagtgggtccagctcttcttacccctccaagcctgccat
tctctgaggagtcctctcttcctccactgctctgcttcctctcacaaagggggagtgtcc
caccacgtccaactccaggctggcaaagtgacgagaaaacaccccacccatgtgggcagt
gggcatgcggcatgctatggggccatgagaagcagccaggtgggtaggccagaccctgac
ccagagcaagcagagcccagcgcagtctcagccacgctccatgaggggccacatccacga
gggcccaggagcaacatcccaggcacaccccagggatgagcagcacaggccgccaaccac
gtcataccacactcacttgtgcaaaacaccctcaaactgcaaaaagcccacccacgtgtc
caccagcagaagagcaaatgagtccaggtggcccacaacacacggggcgcacgtgtccat
agacagcacactggattcgaagagccagacacgagtgtgtctgctgtggccttctgcatg
catgagggccccatggtgctgggggccaggcagacagtcaagcagcagagtggaggggag
gtccaggaggagatcccacaggtacatgtgacatgagctctatcgtatgtgcacctaaga
tgtgtgccatttcctccacggatgttataccgcaaagaacaataaaaaacgactaacact
gattgctgaccacctccccaaataactaatcaggacacaccctgatgccccatgtccggc
ctgtgggggcactgtggaaagcacaggaagtgagctcagtgcgtgccttccccattgtcc
tggcgttccatgcaggctgggagacgcgggtgacagcctcacaccacccctgttcccaga
agaggccagtgcacccccaagcaggggctgcaacagggctgcacagagggctccagttcc
ttccagcacaggaacaaatccacaccgaggcatccgtgagtcccacaggtcccagaagca
tgggagcagcttgaggcctctgcattcaggggtctctgccgtcctgagcttcaggatgag
tgggttcccacctagcacgcagtacgcagtgggttagggcaggtgctctccctcctctcc
ctatgaacgctataccactcccatgaaagcctgtgcgtgctgcctcaggaccctgtagca
gaacagcgagtgacgtcgctttggcagggaacctttggtttgcaaagccccgtcacacac
acaagctgaggtaagatgacaagtctgtgtctctgcacctcagctgagccctcaggacac
agcacatgagcgcccaggggcctgcaaacagcaaggaccaaggcatcactgaccgtgaca
ggccccagtgtgtgacagtgagaggccccagtgtgggttctcacaagcttgttttacggt
ttgacccagagagtacctgtgagtttcccctacagctggtgcttctaaagggctaggaga
aacgcagggcaggatccccacacgccagcagctgactggccagacccctgcctgtgctga
ggcatccgccgcaaacatgaccgtgcaacatgcttcaagatgccctgtgactctctcaga
tgggtcttttattagagtttctaaataaagaagtgatggccaacatcacaggaaacctta
gatactattcctgccagttggtttgaaaaagctttaactgttaatttgctgatcgttttc
agccacacggttttctgccatgtaatccacagaacccaggcctctggccacttgtccagg
atacctctggagctcagagccactgtccttgtgggctactcaagacttgaggggttcagg
caagagccacatcaacagagctggacctggtgcctggctgggagcaggtgccggggagca
gccaccaaatgcacacacgccagggcacgcaactgcccgcacctccaagattgtcgtcag
acctagaggcgggtgtgcgtccacagacagcacactggattcaaagacccaggaaggaag
gagtctgtttgctgtgggcttctgtggtgctagggaccaggtgaacactgaaggaggggc
cagacggagtccaggaggactcctgtagcaggacattgcccagatttctcacaatgtcct
ctacaattaagagcacaaccactgttccttctgcactggtgggaacccagcacttcaatg
agacacaaggttaaagtgacgctttgtaaggacggaaagccacctgtgggcaccacaccc
cccgggtgggccacgacagggagcacaggcactaggagacccggcctgtcctaaaagcac
gccctacaaggagtccccactctctacctatctgcttctaatgttctgactacatgagag
atgataaaagggtttcaatacaagtgtaacattttaaatataaaggaatgtctttccatt
agaaaacaactgcaggccgggcgcggtggctcacgcctgtaatcccagcactctgggagg
ctgggtgcggtggctcatgcctgtaatcctagcactttaggaggccgagacaggtggatt
gcttgagctcaggaggtggagactagcctgggcaacatggtgaaaccctggctctaccaa
aaaaaaaaaaaaaaaaaaaaaaaaaaattagccaggtgtggtggtgcacacctgcagtcc
cagctatttgggaggctgagatgggaggattgcttgaacctggcaggcacaggctgcagt
gagttgagatcacaccactctactccaccctgggcaacagagtgagaccctgtctcaaaa
aacaaaaaacaaaaaactgcaaattaaaacgccaaacgcacagattaatggaggaagccc
catgcccaaatgctcccaaggaaacgtcagaaaggagaggacttcaggtggctcggaatc
ctccgccacgtgaccaagcccagctgagcactgggtctcattggatttgccatcagacac
tcacagtttttgtcactgttaaccctactgcacaatacatgaacatggtctaagcaattc
tttttttttttttttttttttttttttgagacagtctccctctgtcgcccaggctggagt
gcagtggtgcgatctcagctcactacaagctccgcctcccgggttcacgccattctcctg
cctcaacctcccgagtagctgggactacaggcgcctgccaccatgcccagataatttttt
tgtattttttatagtagagatggggtttcaccgtgttagccaggatggtctcaatctcct
gacctcgggatccacccgcctcggcctcccaaagtgctgggattacaggcgtaagccact
gtgcccggcctggtctaagcaattctaaccatgcagacaatgtgcaggtctttcctaggt
ggaaagcaagtttgcccaagtcgcacgagcaaggctggAGTCAGCAATGCCTGTTCCT
Primer
(+)AAGTCCCCGAGGACAGAGAT
(+)AGGAACAGGCATTGCTGACT


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