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Human element [ hs2568 ]


Position: chr6:125,904,556-125,907,476 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: HDDC2 - LOC643623

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGGTTGCCTTTTCACACAGTtgattgtgtcttttttttttccttttttttttttttttga
gacggagtctcgctctgtcgcccaggctggagtgcaatggtgcaatctctgcttactgca
acctccgcctcccatgttcaagccattctcctgcctcagccttccgagtagctggaatta
caggtgcccacaactgcgcccagataatttttgtatttttagtagagacagggtttcgcc
atgttggccacgctggtttcgaactccttgacctcaggtgatctgcccaccttggcctcc
caaagtgttgggattataggcgtgagccactgcgcccagctcctttttttatttttagtt
gacggatagtgtttatacacatttatgtgatttgtgtcttttgatgcacagaagttttaa
attttgaggtagttcaatttatttttttccttcagtgtgcttttagtgtcatatccatgt
aaaaatttatattttatatatggggctaataaaacaagaatcatcaaaaaattaaatcta
aaaattggtaacctattcttacttccccttttaatgactcagtgaatttcatctgacctg
gactgtgaacctcaagagtgctgggagactgcaaacgttctcatgcaaccagtgaaatgt
tgatgggatgtcaaaactatgtgactctaggggctgtgctcagtataactttaggattta
ccatgttggtctcagtgaccaaagagaggatatgacagtgaggttgcttcactcactttg
gccaaccatgtttgttgaccaaaggaaaaaaagattattccacttaataaaatggatggc
atccatgtctggagcaggaccacatcccaggcacttttcacatgttctctcaccactaac
ctgtgaggacatattgctaagctcatttcctagatgaggaaactgaggttcaaaaaatga
gtcactttttctagttcagatagcaaatggtgagctgtgaattcaatacaaatctggatg
gttcacaacttgcacttagaacatttgtcttggcacacaccctctgaggaaaaggactga
acagcactttcaaggacatagagaagacccaagtgagggtgatagtgtttcatgaagcca
ttcctacctctagacagactgtctgggcatccagagcctccgcctcaaacatgcccaagg
gagttctgcagaactgcgagtaaataaacagagcaaaccctgttgcaggaacaccactga
gctattcggcataaaattcgtgtccctttgtttactcagcagcttatgcatggaagccag
agggcactgagatgccgggatcttgttctccaagtgcctgcagctcaggcctgcctgctg
tcacagcgggacaggcagcctgtgtggagggtcacatgtcagtgagtaatcactaagaaa
agcaactctctgaagggctgatcaacatgtcagggtcaggacgcgccacacagatgtgta
aatgtctttgtgtgtgtgttcgcattttaagtacctattaagatctgtcaaacatgatca
agcatctttaattaagtgcctgggccagttcatatgtacacacatgcaactgttcgtttc
tacccacttgtaacttgataaacattttctgtggaattttatgttcacttatttacctaa
gcaagtaaataaaatacatattgaaggtatttttttcctctggtctactgtaggtattcc
aagaaatatttttctatttcatgtacataaaactttctctccaactactcatgcagccaa
attcaaattcagaatctagagatgggcgaactgtcactaaattgtcaaatatctcttttg
ttttaaatactttggctagtggttgaaacaatgcgatatatctagcacgacttctcttaa
tttttaatccaatgtgtatttcaaggggaatttaatccatctggttctcattcacttact
cttaactcatcaaagtggtactttgcaactgatgtttgatgtccaaaatggcttatgggt
ttttaagtctttatagagatcttccctgcctgcccatttgtcctctccacaacaccagtg
ataatgaagaagttatattttgtttacctgacatagtttcaaatgaccagaaaggtacgc
ttgaccaaatgtcaaagctctcagccctatgaggtcacgattttggagtgtgataaagtg
caatgacctgggtggcacgttgctggaggctgcacatgttgctcatgggcagaggccatg
tactctgtgctgtaccttggcttgaggtccatgcccacaatggatgtccctaggcaccgg
gacctgtgatctgaaacttctttcatgtagcactccacacatatgatgccacaacctctt
ccacccctgtagcacacacacacacaaagcattctcatcacatgtgttgtctatgatcac
ttcaaaacaagtttttaactcaagaaagccctgttgtatcaggagaaaaacacattcagc
tgctcctgctgttcaaattctaccaataagaaactttctgccgtcttctcaggccttggt
acttccccaggtctctcgaagaatgaccacaaaatgcttaaatatctctcagaagaagaa
aacgcagtctaccatttcaaaaacagttgcaggatttgggcaccagaagtagtctttcag
atcatgtagtctttaaaatgttaactctccaggtatctgaataggaaattgttcatcaca
tttctgtattttgttctttcttttaaatgtttagtgatgtgtagtcatgaccttagccag
cttctccactcattagtcactcaataaacatttagtgagcacctacattgagtcagacac
tgctaggccctgaggttttcaGAACGCAATCCTGTCCTGAT
Primer
(+)GGGTTGCCTTTTCACACAGT
(+)ATCAGGACAGGATTGCGTTC


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