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Human element [ hs2566 ]


Position: chr4:6,770,024-6,775,277 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: BLOC1S4 - KIAA0232

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCCGGCTTCTCCTTTTATGAccctgagcttgtcggtctccctatcctcatgccccctgcc
cttggagagacccagccttccttctacaagatcccctgctgagggagaaggagctggctg
gggcaggaccgtaggctcaggctacatgccccaagttcactctcagctcacatgctccag
acattgtcctggtgctcagcctgccatccaggaggcccctcccaagctcctgggcttcca
tcctcagtgatccagtggacctggttcccagagctgggtgggaaagggccccttgcctct
gggatgggaggaaaatgttcagtcctctgttaagctggtcgcagactctgatgaaccttt
ccagggccatgagtcatgccgttttccaaaagaggaaggaggctcggggagagtaagtgt
cttgcccaaagtcacacagtggagtcagcacttgaatttagctctgactcccatggcacc
tgctgagtgcctgacctgccccctccatcccccatggcctgcctgctcctcggtgcaagg
atcacctcagctgtcacagctttagaagtgagctgtgcatgaacccctgaaccccaaagc
atcagggagggtcacccagaaccccatgcctgctggatgccgaagccatgccaaataaat
gggacaggcctactcatcatgcaaagctccagtgatgctttagcttcccaggaaatctct
cttgtcatgatgagcaccagtagcaagtgacggccagcaggcccccactacaagcccgac
actaggaagaggtgttcccagcccacacacaaatgcctggagaatcactaatttgctgcc
cattcttgctgggaagagaattttctgggaggaagggctttgttaaccaacaccctggca
tctagaattgccattgggtctccgtgattctagtcaagggattcggccatccagagcagg
gtatcgggggccctctcggagtttgaacctctaacaggatggggcccatacctgggtgca
gctgcggttgtggggatgccccttctgagcagctgctgcctctgtgtgctccccttcctc
tccccacccccactctcttcccaggtctccctctgcttactacccagcatgggcaaaagc
agctgcacccagtatggaccaataggggcacacccatttcgaggcactaaatgtggtgct
gataacagagtccccaggcctggcttggcccaaggatggagcaccccaacaccccagctg
tctcaggggcccactgctcagcctggctcactccccgagggtgggtggtttctaagtgca
gctggtgggcttgtgtgtgatggtggacggatcctggagtttagcagggtgactgtggcc
aagctgtttctctctgggtctgttccttagtgttattgatgttgttgacagctgaccggt
cctgcaccgtactaatcattttacatggagaagctccatgtaaagcttctaggttgtaat
tctcatcacaaccccgtgaggtagttcatattatcacctccattttacagataaggaaac
tgaggaccagagagctcaaactgatgtgccttaggtcacacagctagtgatcaattgagc
caggccttgaacccagacagtctggctccaggacaagcccgcacaatatctatacagaaa
cagggcctggtgcattttagggctgctgtgattttgtccttatctgcaggtgcttttacc
tctgatttcattcgccctatgacctgtatggtaggttttattacctcggttttatcacac
tttcatcctcctccagggtagaatcagcttacagatgaggtaacaggctcagaggggtta
agcaacttctcaggtgtcccacagctggtacgtgtgacaactcgaattcaaagaagtctc
ctgactctcactgcggagcctcccattcaagagggacctcaaggtgtcacagaatttaga
catactgaacgtccttactttatgagtccagattcaaatcagtaataacgcaatgtcaga
ggagttgaagaattctttcatgtatttgtccatccttgttccacaccttgtcctaggatc
cttggggttgcagtggtggggatggaaccatagagatgcacaagccatagatttaggaac
tggaatttcagcaatgctttcgggtcttctgacaaggtgcaggcaggccacctttcttgt
atggcagggcaggacagggctggcctgtgttccagttctggctgtgtcactcccatgctg
tgtgacttaggacaaggctctgctctttctgtacattgggtcaccaagcagggatgagct
gcctggtgtggtgactccaggtggctccaggaggaaggcaggggccctctcatgtgagta
gccacattcctccctatggcttgtccacaaaataaggggacctcacggagacagctctgt
gcacctgtcatgctgtatcgttggagggattggagcaaggctgcagcttccttggggttg
gatcatcacaggggccatagtcatgaagccgattggctgtgaacttgggctgtggggtcc
aaagacccagggttaactcctggctctgccaccagccagctgtgtgaccttagccaagtt
acttagcctctctgagcctcaattgcctcattcataaagtggggaacctagcacagtgcc
gagcagctgctcatttactgcaggcacagtcactgaagctgagaattatgaagctgatga
ggatagagggtccagcatagaaagtgccacctacaagcacctactatgtgccaagacaag
gagacaagaaggtgacgtgatttacttctgggcatacagcaagaacatggcaaagctgga
cctgagcattgggatgcatcagcgcctgcggtgcctggtggctctgagcctgtagcaagc
tccctggctgaggtctggggctgtgccctagaggaggagcccctacggccactcctgctg
gcctgtggctggggcagcatcagcagatgtcttcagtccatctggcaggtctcacttgct
tggtctgagaacctgccccacaggcctgagctctgcagggaaaagaaataaaaatagcca
ggtctgagagggcagtggctgggccgtgggcagcaatgcgtgcctttcccatgactcctg
ctctgcagaggagagtccttccctgagccgtcctgtgtgccaggccctgggctgggtgcc
cgggaagcgaagttgtggcaggcaaagctgctccccagaggagcccatagcttggtgggt
agaacatatttgtccagtgcggcaccttggggtgggggcccgaaagggctagcagtggag
cattgcaagagagaccccctcacccacctgggggaacacaaggtaagcttccagaaagag
gacacactggagaaaacagttgttaagcagagtggcggggggctttccaggcagtgggac
cagcatttgcaaaggcagagaggtgtgacaagcatgtcccattgagagaagtgtaagtac
ctgggtacatctggaggctggggtgtctatagggacaggatggagggttgcgctaggaaa
gcagggagcctgggactgtggggacgatggggagccaagggaggttataaagcagggggt
cacgatctctccttctcaagatccatagccttaatcccatcagcaaagtcccttttgcca
ggtaaggtaacatagtcgctggttccagggattaggaggtacacttctttggggggtcat
attctgcagaccctgtctctgtaataaactgcactgaatcctcgtccaaaggcttctagg
gactccaactaagacacccccaaccttaattctggtccctgggctccccgtcacaggccc
cagcaccagatccttggctcagcccctccaaaaatcttggcaggtcattctctaaacagg
cgagagctgggttcaaatcctgcctctgctgcttacttgatctgtgaccttgggcaactc
accggtctctttcagagcctcagtttcctcatctgacaaagggggtaaggggcccaagag
attactaagcaggttagagggtcaataagtgcctggcgcatagtaggtgctccagaaaca
agagctattgtcagttaccaggtagttctagccctttgtttccttcccctgtgcagaaaa
taatcatcataattacacgctctgctgtcatcctgacctgcaaaccctcctaggggcaaa
gaagtttgttttgtttatttgtttcctggatgcaaagaatctgttgatttctccaagcct
ggcgctggctgaaattgtcccagccaacactgaagctgcctagaaggtggctgcagtttt
ggggtggcaccggaaagggctcttttaaggagccaccagcaccttcgcctcaaaatcaag
aacaataccaggccccatgccagccacaggagtaattaggccagatggtttcaaggcaga
aattccagtagtccctgaaatgctataaatcgagccacagacaggaggtgtggtgacttg
acagcaatttctccccaaggcaaggcctccgcggcatcacagccagccttccctccattc
cactgcagaaataaatgaagttatggatgttggtgtttctttgcggtgaatcaaatggat
tccctgtgaatgctgtttgatattcttcttgatcatgtcaactagacagaatgtgtcttt
ctagcatttgtttttcaaaaaaagatgtgtgaaataggaattttcacataattcctgaac
aggttttggtggcagtggtgtttgttttccaaaagccgggacaggaactgcagagccttc
tagtgctttccttcatcttctccccagtgcagccggaactcgcccctggggtggcccact
ctcccccactgagagcagcagagacagccagctgcacaggctcgggatgtgggctgggag
aatgctcccccgtgaactcacaagcacatgttaggtgctgtggatacaagaagcccagtc
atatggagagtatgtggttgggcggccaggctttggagccagtggcctgacttgttgtcc
cagctctgccactccctggctttgtgacctgaggcaaggttggtatttctctctgcttcc
ataacatgggataacagtggcacccacttcatagggcagtgagggattgatgtataaata
caggtagtctgcagAAGCTCACCTGGCAGACAGT
Primer
(+)TCCGGCTTCTCCTTTTATGA
(+)ACTGTCTGCCAGGTGAGCTT


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