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Human element [ hs2544 ]


Position: chr6:132,274,880-132,277,674 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: CTGF - LINC01013

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGGAATTGGTGCTTTATTTTTttcagattttcttgattttttttcaatctctgtgtataa
taagtatattaccattctgctctgttgttaaaaatgtcaaaagaaagaatttggttttac
tataaaattctcatagtccctcgaagtctcaaaaaaatctatagtcagttccaaatagat
gattttaatgttgcttaagaggaaataagcatattgaaatatatagaacatatgaaatct
caggaaagaaaaagtttctgtgcattatcaggttagattgaggctttatgatcaaaactc
tttttgaaggagttaaaagactattattaagagagtgacacagagacagacagacacata
catgcacacacacccagagagagagagaatgagagaagacacccaagacattcacagact
cagaagtatgtttttattgtgatatggaccatcaaatgccaggaaactcaaagggaaagg
ctgatactccatccataattcatgccatgggatctgaattcttgcactattatcaatgac
tcagcaaatgtttgtgtgtgcctgggcggtaaagtgggaaatagtggcttcttataactt
catccaactttgacttaccccagcccctttgattgacagcaggtcagagttgggagaaaa
agatctttgaatttgtgtgcaaaatggttaagatgcactaattttgacttgtaagcaagt
atttatctagcaaatgctttttagagagcattttttcctcgtggtaaaatgaggaattaa
ctaagctggccactgagtcctgtttaccaagctatataaggtatgtgtgtgtgtctacta
gggcatcatttgtactggtcgtttggttaagtcttgtaagatgttcagctgtggatgtat
tacattccttcccttaagttttttgttgttttttcctccctaaaaaaaaaaggtttcttg
atcaggtatcagacacagagaaaacctggcaggactacagaaaagtggccagagttggag
tgtttgtgtacttaaagaaggaatcttgcacattttcaacttttagttgtagacattttc
ttataagagcaagtaggagtcagtgccagccctcaaagcggaaatcaaagctcccaggga
aacatgccggaggaatgtgactcagagccaagacccatacgcaatgcatacacggagctg
tcagacttataggaggaagtctggccgtatatgggcatctggacagtgagcgatttgtcc
ttatggtgggtcagggggaggtttctgatgtttctagcgtgcctcaaattcaatcatgta
aattaattctacaaaaaaaaatggtatcccagaagccttttgtaaaatagtaataaatat
tattctgaaatcttcagggaccctggtttggctgacatgacctcctgtttgcttaagatg
aaggttaaggagagggcgtacttgctgggagttcatggcggggaagataaacgcggatgt
ttactatctaaattacattcattaccttcatgccttttcctccttataattagttctctg
actttcttaggatattttctaatgcaaaggtatttgtcagaaggcagtcaaggccgttgc
atgtggtttgtgttttatgtttgcctgttcctcgcttgtccatagagttggaggccagag
gggtgagaaaggaagttttgttttgtaagatgatatcccttcaacttactgtttgtttca
cttattttgttaatttgactctttttttttttaaagtagtttacttagaatcctgtgttg
cctctagtcagcttttgttcatctaagatagtgtcagatgaggatgctgctaggtaggaa
tgagcctggtggtctcttacactgtcctcgacaggttagaatctcaaattcatcaccgtt
tagcaaccaggagtatttacagccccttgcttcatcagggctaaatgtgaagcatcccct
tggtgatacttaaggtgatatttaagtgagtgggaatgaaaaacagaggaaataagcatt
tcttaagatgtgtgatttggggacacccaatcaataggtttaggaggaagagagaattgg
gactagctatcttatctcaaataatagaagtaagtgaaaggataaatattttgaaaggac
tagtgtgaaatatacatgaatgtattcctagggattctgctgcggggtgggaaaggggtg
cagattaagccagaccccatcattcatccctggaaatgtgctcccacctctagccaagag
gcctgaggtcccttctcacaacttcaaactccctggaataccattaggtggagcctaggg
gactggctaggaggtgaaggtgtgagctccatacctgccatttgcttgccagtgacctca
gggaagacacctactctctctgagcctgaaatttcccacctgttcacagttaatgtgcag
ctcaaggagacaatatttatgaaagcactttcataaaggtattagagttttaaaattgcc
cttctcttccattcttcagtggctctcaaaactaagcccaactcagattgactgtaaaag
cctgtcacagtttgattttataacagtgtccagctctgcatgggttttagagtgttaaaa
ctaggtgagagctcagagaaaatcaaatcctacctcttatttatttatttattttattag
attagatattcaggattgatagagacatttaacaaatgaaaactttttttctttttgaaa
tagggtctggctctgTCTCCCAGGGTGGAATGTAG
Primer
(+)GGGAATTGGTGCTTTATTTTT
(+)CTACATTCCACCCTGGGAGA


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