Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs2542 ]


Position: chr1:201,323,367-201,328,049 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: PKP1 - TNNT2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTCTTGCACCCTGGGTAGAGccccactcaaccccacctctactgttccctccagaggccg
cctccatgtgctagacatagcacatctcctcctgtcaggtcccaggtgggcagctggagg
gcagcagagagggtcaagctcctggactcctgccctgtgccctcaccccaagtcagccca
cgggaggctctgattctggcccaagcactgcaatctggggagatttgggatgctcctcaa
tctacaagatccacatgttaggaagaatcctggctctggcgtcacatagacctgggttca
aatcccagctttgccacttactaactgaatggcccttggcatgttgcctaaactctctgt
acctcagtttcctcatctgcaacatgcggtgtgatctggggactgtggatggttggctgg
agagaacatatgtaaagtagctggcccagtgcctgcgtggggggcgcagagcgagaaaca
catgaagggtatgtgtgcagggggagaagacgagctgacccagatcagcagcattttccc
caaattcacacttagtcttcctcctggtagggatgacagggcagactggactttcagagg
agaagccaagcccagagaagcaagtgagtgcccgtggctacactgtgggaacatggggtc
cagcctggtctcccctgcacccccagcctgccccatacccaacaggagcctattagagag
cctggccctgagacctatccctgagcccagctatttcccccaaccagggcaggttccctg
gaagctcaggccctgccccacctttcccagaaatcaagctgcagagtagggagtggagcc
tggcctgggaacaagttctggcacctccatccagacagtggcacacgctgaaccacgtgc
caggagggacagtccgtagcagcaaatcccacccacccccaacccctggtggcctatctg
gtgagggagaagaccaggccgtggaatccaggaggaaagaggagccattgaagggttccc
taaaaccacacaggcaaggaggagccagcccagacccagcatgggtgaactcttcttctg
cagaccttgagcccttgagaaaggctaataacgtgttttcatccaaaaggcagtagcagt
ggctcgtgctgattacacactatgcactaagcactgtgctagttgctgcatgtttatttc
atttagccttcataacaatccccattgtttagataggggaacttcagcacagagaaggca
aggaatttgaccaaaatcccagagctgggaaggggcagagccagagtttgatgggagaaa
gtgaggctctagcttcagagcatcggggctccagctggaggagctggattcccaggcgaa
ggagccctgggggaacaccttgttctctcccagctctacctctaaagtgggcatcacacg
aacaagctctgcccaggatgcgagcttgttaggagaacgaatctgatgacaggatggcgg
aagagtcttcacctctgactcagggctgagaagagcctgcaagtaattttccctgagcat
ttggtgtacacagggtgctgagaggcccatgaggcaatgggtcatggatcgaaagtacag
tgagatgggatctgagaggcatagagggaggtccctgcaggggacagtggggacagtggg
ggtcagagtgtctgggtgggcgtcaactcaccccgctgcatccagctcctcagttgtcag
gaggcccaggacagctcttggccactgctgcaccttcaacgtttggttcaggaccatcat
aagcacaagaatgatggaagtggtgggtgaactgaggagggtgtgtggaggccctatctg
tgaagctatctcagtgtgttctgtgcacacatccatgatctttctgttccctagcaatat
tatggggagagcacaggaccacttggtctgaagcccccacccttgccttttgaaattggc
aggactccctgcactgggctgatggaccaggtgtgcccctgcaccctgacactcacttgc
tttctcctctgtcctgggataggacaaggtccccttcccaggctccacttatggattagt
gctccaggttccatgcagaccaggtgtctgcagatctcctgcctagaggcagcgcttggg
ttaacctgtggtgttcctcttaagatgatgggatggggacctcaactgggtgaggccccc
atgggggcagcgcctgggacactccgaagttctttcctgaacaccaggtgaccttaggag
aaaagagattaagtgggatctggtcttaggggcttttcagagtcggagggcaagggtgtc
ttctgtgcccacctctgggcacagttgttttttttttttgagcgattcccctgcctcagc
ctcccgagccctactacaggcacgcgccaccatgcccagctaattttttttttgagacgg
agtctcgttctgttgccaggctggagtgcagtaaagacagggtttcaccatgttgcccag
gatggccttgatctcctgacctcatgatgtgcctgcctcggcctcgcaaagtgctgggat
tacaggcatgagccaccgcgctcggcctgggcacaatttttaaaagagagaccacatcta
ctagagcaggggtccccaacctctgcaccgtggaccagactctaccagtctatagcctgt
tatgaaccaggctgcacagcaggtgagctgtgggtgggcgagcatgacggcctgagctcc
acctcttgtcagatcagcagccagcagcattagattctcataggagtgtgaaacctattg
tgaactgtgcatgcgagggatctagggtgcatactccttacgagaatctattgcctgacg
atctgaagtggaatagtttcatcctgaaaccacccccacccacccacccctacttttctt
ccccaccccacccctgtccatggaaaaatagtcttccaagaaactggtccttggtgccaa
aaaggttggggaccgctgtactagagaaatggtcacaaggaccctgctgggagaggggga
gcaggagacagggccccagacacacggcccatcatgacctcttgttgcaccaaggagaca
ctgaggcataggcggtggagccaaggcggcaggtgggggtagaggtgcagtgccccttta
tggggagaggggctagggcactgccccagctgtcctatccggcaaactgagatagtaggg
ctggtgcgtgccaggagctgccagtgggtctcccagagcccgtggtgacagccctccttg
ggcctgaggcctgcgtcctgcctccctgtccattttgggggcatttatgatggagccttc
ttgtccccaccagaagatgcttggattctgctaataactatatctcttcaaacacaccat
gctggctcttgcttctcaaactttctatgtgccgttcccagccccacccccaacctcttc
cccttgacttccccctcctcaccctctggtactcggcctagacactctttcctccagaaa
gccttcccacctgccagggccaggtgtggtgcgtggctatgcctctccccagcatcgcac
cccccacccgcccctgtcacccagggctgggacctctgcttgctgtctccctgctgctgg
atgtgagctctgtgagctccatgagcgatgtgctggcttaaatcacagcaccccacaccc
aacacagtgtctagcacatagttggtgctcaggaggtatttgaatgactgaacgaatgaa
tgaataagaaatgaggccgagaccccaggctaagcccctccctgtggcccaaggaccatt
tcctcttcatctctcactacatggatcccagtgcttggcatacagcacaggataacatgt
ctgcattgtctcctgggagcatgagagccacgcctgcaggaagagacccgtctaacagag
tgtggcattggatggcatagctgtgacagcacatgctctagcaagcagaaatggatttgc
tctggctgggagaccacaggaagcctttccagacacagctcatgaggcacttgctgatgg
atggcaagtggggagccaagggaaggaatcaggaattgggggaaattccacgcctgacaa
aggaatggagggtcaagagaatgtgtcgtctcaggctctcctctggagaggaggatggtg
ccctctcatcgtttccttgtctttctgccaactgaaatccatgccaccaagctgtcctct
tcagctcaggaccctgtgacttaagccctcgaggatgtgcagatcatgggagggggaaac
tgaggcacccagactaacccacacctctcaacaactcaggcctgaatagctgcccaataa
aactggccttccttccttcctcaagagctccctgtccctcagacacctggttcctagggc
cctggctaggaggagaaagagaacgggaaccatccgaagagtcctgcattgttctccagt
gagtgactcatgcagggaacactctgtccccctcaacagcacttttcccatgtgctgttt
tggtgactcccaggagcaatgatctgaagccctttccactgctcctgcctcctgggctgc
accctgggccctccaccctctccccagctagaggcaagcagggAGACCAGACAGGGGAAA
GCT
Primer
(+)CTCTTGCACCCTGGGTAGAG
(+)AGCTTTCCCCTGTCTGGTCT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.