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Human element [ hs2541 ]


Position: chr11:2,030,706-2,036,013 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR675 - INS-IGF2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GACACAGTTGCTGCTTCCAAgctgggaacgcagtgtccctgggcctctgtcccttccagc
cttgttttctgctggtcttctctttgggatctctctctctctctctctcgttgtctgtgc
taacagttcttagagactctcttcaggggacttctcctcctcctgactctgaagtcctcc
tgtatccccactttcctgcccctgcttccttaggctcacgctgacatcagcaaggtggcc
ccaggacaccctctccagggctgccttctcgtctctcccaaaacactcacagcctcccag
agccagaccctcccccctcaaagacaagccatgctgtcttcaggtcctctttctcccact
cgtggacaggccccagccaggctggtccgggccatcttcttccccaggacccccatcctc
cacccacaggagtggccactatctggaatctcagcacgccaatgccagtgggatctgagc
caggaaggctggagaagtctctcggtaggaaaggtggctggccctcctcttcctcgccag
gctcctaggggtcgtgagtagagggatgtggacagaggggacaaatggcccagactttgt
ctggggctcacagtgcggtcccagagaacaggcaccacgtgggaggggtgtacatgtcgg
agtggcttcgtgaaggccagggcaggggcttgggcaggacatgccctgcggaggagagcc
ccttgctccctgcttggtgagaaagggctatctgaccaggtggggttttaagcccttgac
cgtgggtctggttcatagcaggagctcgagggatatttgttggataaatgaaaggatcag
tagatgagcaagtggactgactaaggcttagagaaaggaggacgtggcctgggcttttca
aggcacagaggacgccttcctggtccagattcaagagggagcgagggcctccttcctccc
tccacgccaatcgttcctggccccttccagaatcatctggaagctaatcctttagaaaac
aaatatttcagacatctcaacaacacaggccctccaagtggggcctgagcagatgggctg
gggcctggaaactatcccacacccccagacgctggagcccaccacaccgccccagcaacg
tccgcgggggacgcagacctcggccaggaaagtgtcagagccgccggccacctgcctggg
cccccgctcctgggccctgtccattccccttggcagcttgagccatggacaggacattcc
tgaaggctgaggctgcacattggggggtttggggctggaaaggccggggcaaggtccaca
gtcacccgcggctgggccgtgcggctgcctctcctgcctccctccctccccatgtgcacc
ttcccgcgtggggctggccaggaaatggggcatttgtctctgtggcccttcctgctgtct
gtgccgggctgcccatctggtctttaccactaggtccctttctgcccagcatccactgca
catggttcaggctggccaccaaggctgcactcagagtctcagggactgggtcaacatggc
cccctgtggtggggttgcctcctgctcgccaggctctggggagcagctgcgcttggcacc
caactgctcccggtggagccctttttcccacccagcccagaagctccctgagcacggaga
ctgtcttctttggacctcttctatccccagcagcagacctgggccctgtcccggaactcg
gagcccagcacataggggcacccagcgatgggccgagagcgttcatgagccccgagtggg
gccagccccgcctgaaaaggccatcatcacggagacaggagcagggctggcagagagacg
aggacaagggcttggaggtgggaggtgggtgctgccgccgggaccagtgagggccagtga
ggaccactctctctgcacgtgtcctccggccctgtgcatggagcccggcccactcactgg
gagcggaagtgattgcattgttctcagatttggtccgtaacagtctccagaaggatcctc
tacgttctcctccctctacccccagcagcttcaggagtgccgagccacaaggctgcagga
gcctgggtccccagtcgcctggaggagaccctgcccacaccatactcagaccaccctccc
agaatggtgactgtgcagagatgcacgcatgtcggctgcaccccgccatcttggggtgag
tacagtgagggaggaccacacggggggcaggagggaagggggacacctctccacacagga
gcgcctgccctgtcctgacacacgtgctgccctggggacaaatcatttcctcgctcccaa
ccctagtgtctctgtccataaataggggtgggggcagagccacactttagtgctttccaa
tgctgcgtgctgcaggcaaacacagcgtgcactcagattaaactcagggagacttccctc
catggagatggggtgtggcaggtgcaggctggtagagggagggtggctgtgggaggaagg
tcccggcctgtgtggccctgctggtctggcagagggagggcggctatggggaggaccctg
agggtggaaggtcccagactttgtggccctgctggtctggggaggagctcgttcacaggc
agaggctgcgtccccaccttggaccgtggaccttgacccggactggccggcaggaccctc
cccttgaggggatgtgagagggggtgacggaaggggttgaggtggccctggggaggggct
cacggtgtgtggagccaacagtctccgtcttgacgaacatgcaggccctgtcctttccct
cacccctcagggtacatatttccagaaagaaatcacttccaattccaagggctccatgga
ggcggatttttccatctgggcttttctgatgagttttcttggaggaaacttctgcgttaa
ctcacttccctcctctgtgcctcatgcggggacaattaggggaggcagggagacctgaag
cccggagccggccgccgggaacccgtttgtccgtgcgcgctcggaaacctggaggcagct
ccccagttcctgtctcttccccgggcgggtccccacctggcctgtggcgtgactgtgagt
caggggtctggatcctccgaggcccgcaggatccgggtggatgggccacgtctctgcacg
tgcagcctctcctgggtcccctctcacatccggctctggctgggccatttcccacgctgt
ggcttccaaccgctcagcccgactgcatctgcaccgttgctggccgaggggaggctgcct
ctgccttcccagccaggaccctgggccccctgtgtgtttctggacctcactcttggcggc
cacccgcgccctcacccacattctccctccgtggcctcgtggcctggtacacttgggctc
tgggctgctgtttccaggacccatgggacaggtggcctggctgcccagagccacgctccc
cgggcccttctcccctcctgcccttcttcccagcaacctgcagatggttggtgttccctt
cacctgtgcctgcctggccttctcctggccccacggtgaggcttctgggagcacgaactg
ctaagggctgcactgtgtctctgcccaggcacggaagtcctgaccccacaacctcagaat
gggcctgtctagaggtggatctttaaggaggtaccaagttaagatggaatcattaggatg
accctgagcccatccaactggtgtttctataagcggagatcagagcacagacgctgacag
ggcaacagccacgtgaggacacagggagatggcggggtctgcaagcccaggaaagaggcc
tcaggaggaacccgccccgcggcaccttgacctcggactctctctctcacgctgtggtac
tttctgacagcagtccaagaagactgaactcgtcacctcccgctccgtttcccaccacct
ctggcctgcctggcctgtttcctccagcctcccacccctccttgtcagccagttgaaaat
gccccttttcccaggactggtctctccatgggcacccctgacctccatagggagtcccac
tgtgcctcgctttgggggtaatcaagattgcccctcagcctctcaggcccctccctgctc
ttgggtgctggatgccctggggacccttcaccaagtcgccctgctgtggctctagctggg
catgaacaggtgctgtctccagagcccgaggtcctcagaggggccaggccctctgtcgtg
ggaacaaggaccctaaggcccgggaggggagcggcacacggagaacaggctggggacctg
ggcgtgagcagctgggcatgagccctgcccgctttgtcccctggggagcctggcctggga
agcattagcttggccagagtctccctgatgggattggaagcccagccctgcctgggaagg
cgcctgtgggctgatggggatggggtggccggggccctgggcttccaggatgcgtgaagc
tcctgcccacacagggagtcaggttcctgtcctgtgcacctggatgctccgggaaggact
gccttggggtctggccacgaactccactggctccagctgtgcagccccgcagaaggtgct
gcagcacccgccctgcccaacacaggcgcggctctggggtccggcgtgggcaggggatct
ggcatggacccatcctcttgagggcctctggcgtggtgggtggcaggctggggagagggc
tgctgccctccttctgggcctcccagccctgcaagggtggcctggaaggcgggcagtgca
ctctggcctgagggcccgtgggagccagtcctctttagaagggccccctccatccccacc
catcagcattcatggccctagtaccagggaaggaggcccaggccatgggacccctggacc
aaccaacccagccagttctggagctacccggggcacccgaagagtacgtccctctgttcc
caggagccccactttagggccgtttcctgggctgactccctggcctgcaagcccccaggt
tgcttactaagcccaaacccccacccatgccactgaccgcccctgctctctgttatccaa
agccctcagctccctgtgccctctgggacacggggcctcctccctacaaggaaagctggg
tcccaagcgcgaccctggcctctccatcctgccccctggccacccaccccctcgccctgt
ttctctgtcctgcaggacttcctctggctttattgttttaagttggtggttgggccaaca
gccagcttCAATTACACTCCTCGCCTCC
Primer
(+)GACACAGTTGCTGCTTCCAA
(+)GGAGGCGAGGAGTGTAATTG


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