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Human element [ hs2539 ]


Position: chr4:140,479,717-140,483,152 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: SETD7 - MGST2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AACACCTGAAACCCTGCCTAcggcaccccccaaccccggcccccgccgtcggtgaagcag
gggtcctctggacctacaagaggcagggacaggaagggagcagggtctttctagcaaagt
cagtagtgatgcggggtcaaactacagagaaccttcaccagatctgcacatgaggcaggc
agcagcagggacacagtcccatccctcttcccccaccattcattcctgctggctctgggc
ccaaagctggggcaaaatgtttttatgactctcttaagatccacttgtatctttacaaat
catgttgtgtatgtttcgagtctccttctctagacggactgattcttatttatggtccta
gaacacaacacagtgcctggtacagaatgtgggttaagcattgtcagcaatgattttgca
gataggaatattctgttttatataaacagtgctgaggctttctcacagactggattctcc
tcctatgttttggcaaagtgctttgtttcagttcaaatctgaagagcatttttgagttgt
tctactttcccacatcgactggccccaaatctgcttccatcgcattctttcccacagttt
tcttcattgagagctgatttcataaactctctttctacttggctttccaccagtttcccc
tgtcgtactctgtccccaccaatgtggtcatgggctagaaaatcaataaaactcttaatc
acaaacaatgtgcagcagcaacagcagcagcagaagtagtgtggctcagctcctaacttg
gcagatcccagtgagacagaacaagctctaccagggaggaacgggaccgcacaggacatc
caacatctaggctgggtgagacttgctttcatgttcacactgagagtgacttttttttcc
ctgtctttggtcttgaatcaggaggaggggtgacttttctaagctgctctggcttagttt
ccattgcctccaaggctatattccttctcttcatacccagcttgggaaacataattccct
cttccattgcagcaagcagtcaaaatactgagttaattttattcattctaccacccctgt
ctttccctggagaaggctggtgcttacatacaagactgatataacttttgcaataaatat
atttttacaagcttcttgtattttatgcaccttcctacatttaggggaaacaattctgtc
aattcgctgctatgcatgctaagcgaattgtgaaacaagtagtgaatgtggaacttatgt
gggattcactactgttggctgttactgactcctcatcctgcccgctggcagggagtggag
gggcccaagcagtcttctgggtctccatgtatttgggagggaggagcctctgagacctca
gcggtaggaagtcgcatcagagcctctccagaagccctggtggctttatggttgctggcc
tggctctggtttccatcacttgcttacaccgccagcaggatgacaaggataaaattagtg
aaagaccttttaaataatcatcaagtctcgttttggcactgctcactccttcacaagatt
ttttcccaccaaattagccagtttgattgagtttttgctttgtctgttttggttccacca
agaactagccaagcaactgggcaattcagttctgcgggggccggggggggggccttcgtt
ttcccatctgtaaatgaagagttgggctacataaattcgaagctcaaaccttctctgtcc
accttttctggagaaaaggtaaatagagcctgagaagccccaggaaaaggcacataaaaa
ggaaatgggaagaagccagggcaactccaacaaactgaatactcaagtcctctcacgtta
atggctctatctgggcaggcaggtgaggggagaacctttatcttgactctagggagggaa
gcatggaagttttaggagaaccaaggttcctgggttctgaatcactgagtcactaatcaa
gtggctaactgtgttagtgacaactgcagaagctggagggaggggctgggagaggagcag
cgaggaggagacgggtgggggaggagatggggatgaaagggaagcgtttgcagcttgtgg
agcactgggaagagcagggacatcaagggcaccaaataaaggtccagggagcaaagaaag
aaatggagaaaattcattctgctggaaatagacatgagtgcagtcaggaagaagacttac
agattcagggtgacctgatttgattacagcaacaggaagtgcaagagagagagggcagaa
taacctgacctaaggaagtgaattaaataatagagaagacaccacagttgccatggtatt
aaaatacctcatgccacattaagcttcctctttctcttttgcttgattcttgtttttgca
acatgttaatgttgcaatgacatgttaatgtcattgcagggtatccagtaaactaaattt
agactttctggggcggggaggggagggaagatgcagcccagatctccctgtttgggtcga
ctctgggccaatattgttccttcacagagttcttggggttttttgcattatgggatatga
aaactcttatgtcaggcttgggcctagtgaagctgctgagtgaaatgattgaaaaaaaaa
aaatgaggccaggcacggtgggtcacgcctgtaattccagcgctttgggagacagaggca
ggtggatcacctgaggtcaggagttcatgaccagcctggccaacatggtgaaaccctgtc
tctactaaaaatacaaaaattacaaaaatacaaaaactggtggtgcatgcctgtagtccc
agctacttgggaggctgaggaaggagaatcacttgaacctgggaggcggaggctgcaatg
agccgagatggcatcactgcactgcactccagcctgggccacggagtgagactccatctc
aaaaaaacaaacaacaacaaaaaaaaccctcacacacacacacacacacacaaagaaaaa
ttggaaatagttttcaaaggggcatctgttttagaaattactttagaaaaacaataggat
tgcagaaacttgaaaaataaagacaaaccgccaccaaaaccaaatgtgttttcatagata
ttattttctctaattgtttttgaaaaattactttactaggctaaaattaagattattgag
tcctgcaattggtcctctgcaaaagtagacattgcagagggcaggtacatggtatactct
tttgacactacaatatccaggatgggcagaggagtatttccagctgacctatttaccaca
aatgtcataacattcatcaagggtcagctcttgaccttcctcaagtggactcacattaac
tagaccccgagagactgagatgtatgcctgaattatgatggacagatcagaatactCACA
CTGTCAGGGCAAAAGA
Primer
(+)AACACCTGAAACCCTGCCTA
(+)TCTTTTGCCCTGACAGTGTG


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