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Human element [ hs2538 ]


Position: chr9:137,257,071-137,259,385 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: RXRA(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCCTGTCTTACGGATGAGGAgatagaggttgaggatcacagccccagcctgcaggcgctc
gagctgaaagccctcgcccctcgtggtggggcagcgcgtccctgggtgagtgaccaggcg
gccttgggtctctggtgagctcagggagcggggtccacgttgcctggcccaggtgggatt
tggcgggtaacgctcgtggtgtgtcctggtgtgagacccggtgttcttggctgatgtgtg
ggtttgctcatggggtggaccaggccgctgcccctgcctcctgtctctggctgtggccat
ggctgtgtggaccaggctggggctgcactggggcctgggtggtagggggtgatctgcttg
tccagtggtttctgtggcttttctggggtcctgggctgtccctcagcaggcctgggactg
ggcggggacagtggggatgagtttcaggtctgttcttggtggctgttaactctaggccag
atgtagccctgaggggcccggcagagtctcggtgggtctcggtggggccagctgtcggtg
ggtgaggtgccccaggggaagggagggccagcccagaaggaccctcccattaccctctgg
tggcttgcccatgccaccattcctactgctaggctcaggcctgtcttggggagggttcct
gggctgggattggccgtcggggaggtgcacacagacgctcagcacagttgtggctgcctc
cagtcaggcgtccgctgagcgacccctaggagccgcctgtctttgcaggagccgcgggga
tcatctggcggctgcctccacccctgcctccacccctccctttttgggaggtggggcttg
gcatcttcagcatctctcgtgcctcagtaacaacctgggagcggtgctgtccctgggtac
agatgagaagccaaggctcagaggcaccagggccccagtgggaggcggcagagcctctgg
tggctccgtgtggcatgttctgggctgtgtgtggggccagggagggtgtcttcagcacag
gtgcccgctgggtggtctcccatgtgtgcccaggaggagtgccacagcctctccctctgc
ccaccccccccatgcctgccctgccagcaggtccagcaggccttggcacaggctccagaa
ttgcacgtgatctcagacggttcccagcttcctctgcagggcggggctgctccagtctct
tacaccagcgcatctgcaactcattacacagcggtgtcggtggcagagtggcctggccac
ggcgagctcctggcgggagtccccctccccagcagccaccccgtgccatgggcctccagg
tcccccgggtgctggcctggggacagcaccacagggcccagccagggctggggcagggag
gaagggcccctccactagtgggctttggcctcctcgtgaggagctgggtggggctggaga
aatcagctcccgccagcctgatcttcctgcctcagaagctgaaccccggggacagtgttg
gtcagaaaagccatagactctccacggaaaaggaagcctggcaccccccatgtttcacgt
aggccaccctaaggtccacagatgcctggggacaaggattagtgtgagcaaagacacagg
agtcggggacacatcccagtcggaacgtggtggaaaggcgccaggcaggctgagtcggag
atgtccctcaggctcctgctgggagaaggggctggtggttcccgggcctgcacatcccca
cccctgccctgcgtgccactctcagcctttgcccagcaccaggcttattatccgattggt
taattggttgagatacgggtcacctcccgtaacagtcatctttttaaggcgtgcagttca
gtgggttttcatccacacacttgcacagccaccaccacagccagctttagaatttcgaag
cacttccaccaaccccccaaaagaagccccgtgcccgctggagctgctgcagtgccccgc
ctgaccccaccagccactcccctgcctgccttctttgtggatctgcctggtctggcgttt
gtgatctccctccatcttcacagcagtctaggtgctgcgctgggcagggactgagtctgc
ggtgggggggagggtggtgaccctgtccggggagacccagccttgctccccggagcccac
ccttccactctctgtgggaagagaaggacactgagtctgccttgggtttctcttgcgtcc
ccacatgcagggacgacgtgccagggcccgctgtgtgcccttaccgtggagatcccactt
tacagatgggaaactGAGGTTCAGTGGTCGAGGAG
Primer
(+)CCCTGTCTTACGGATGAGGA
(+)CTCCTCGACCACTGAACCTC


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