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Human element [ hs2536 ]


Position: chr1:218,631,917-218,634,863 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: TGFB2 - LOC643723

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTGCACAGCAGAATGAATACGttaacatttgtcaaactatactcttatgattgagtgaat
gttatagtatgtaaattatatgcctcaatcgagctattaaaatgctatagcagaatattt
agcaaaatgtaaaatgctcacaattgttggttaaattttgccaaaatctctatatagaaa
aataatgagacacatagtaaatttgtaacagttgttacctaagagcagtaagatttggtg
acactgtcattttcttttttgtgcttttctatactttctagattttctatacaaatattt
aatagtttatcattagaaagcagaaatgttacaaaattgttcatgaagaattgctgatat
catacaaaaaatatatctagttcgatttgaagtggcaagcagtatagaaaagtgcatgca
gagaatagctgaaccttgagaagagcaaacacttccatactgcttactttatcaggcact
gattatcagcactattaagtgcttcgcatttattaatacacgtagtctttacaacaaccc
tatgagacagagtctattacagtctccatttctcaggtgagtaatgtgagataaccagag
aagtagatgggccaaagtcatacaggtcttaaaaggaggagctaagaatacaaaagcagg
caatgagctccagagcctacgcgctgacctgctgctatgcaatgcagcagagaaacggac
caaaaggctcaccgttcttatctctgtgtgatgcgagactagttcttatctctttgggtt
agtattattttttgctttactatcttcacatagtaaacacacattattatactgacagat
atattttattcaaaagatagaatcattaaaccacatcaataacccaaagctaataagcac
tgcctatgtcaaggggtttggtaaggattccatataaacggaaaggccctctctgtgtaa
ggtaatgtgacaattttgctagcattgtgtcagcacagtgcgggcccttgattgttcttg
ctgactttctgaagagccacggggtggaggggatgaggcctgaaagggaagtgcgtggag
cttacttaggcaggtggccaaaatggcggcttggcctctgcagcagaaagacaccgggca
aaagtgcatctaggatatttgggaataagattcaattgtctcgagtccattgccttgaac
cctgggtctatttctcttttgtctgtagcctgtcatctgaaaagtgtcgtgttccaaaaa
cattttattcattaaatttagcccctgccttcctctcctaaaagtggatctgtgttgtcc
aggtttctgacgctccccctcctctcctggaagtcccctgggcaagacaggagtaagtgc
agtggtcgagatcatggcagcaaaggtgaccttgtctgcaaattgcacatgtccttcctt
gccacagagatgggattccaaaacagacccggtaaaagccagttgaggagtttcacagag
tcacagcagggtgttcagctttatacatagttgtgggatgactcactaccaaatgcttcc
taaaagagactccttaagttacggtaacattttagaatggtatttatagtgccaatagaa
aataggaggggcaagttatttggagcattgcctttttctgcacactctcctccctgccag
ctatttctctttttcagttttcacatcttctttgtcccctgcctgaaggcaaagcctgca
agagacagccttctgatggccaaggggctctgcagctgaccccatgtactggcaataaac
aacctttcaaatgttcccattatatccccctctgtcccaaatccccaccctagcccctcc
agctagaccctccaatctgctatgctccttccaacagttctgttctctgtttattaacaa
ttcagatgtactgtcttgaaatgagtggaaatgccagaggttatttgttctggtttcctt
ccactgtgtatgctccgtttccgtggctgtctgttggttacctaggatatggccagggga
ggcaaaggattggccaggagcttggatggattccctgggaggctgtggagcagggcttag
tggtcagtaggatgccctaattgagtgcctgattaacgactcaatgaccccttctgggct
gggctcacagtgtcctctctaggactccaggagttccacatccatacccctgttttggct
cttcttcactggtatataaatttgtctatctgtccaccacaaggctataggattctctaa
aacaatgattatatattattctgtgttgtgcctggcacagttcaaagcacacaaatggtg
cttgatatatgtaggtcaaattcatacctaaataagcacttactctggtttttctctttt
tttagtttgaaataattttggcttttaacattccaataatgattttgatggaaaatacac
cgcatatttattaatcaccaattgcatcgagacctttttagctctattaacttctttacc
cttcaaaatgactttatgataaagtagatattattatcatcctcatcaaattacatataa
aatcaccatgttcagggagtgtaagtaattttgcctgagatctctgttaggaagtggcga
agccaggatttgggtctctgggtgtcttattgcttacactgctccgtaaagcccccaaac
tagactgctacctatatgtatgctttaatcatgtgaattcaactggaaaaatgtgctgtt
ttgaaagtcactcaaagagttaatactggaaataaatgaatggctatgtggaaattttaa
aagtttattatcatggaaaatttcaaacatatacaaaagtagcaagaagaatacagaagc
ctcatgtatcctttattcatctacaactgctttatttacattattctTCACTTTCCCTTT
TCCTCCA
Primer
(+)TTGCACAGCAGAATGAATACG
(+)TGGAGGAAAAGGGAAAGTGA


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