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Human element [ hs2528 ]


Position: chr16:53,808,915-53,811,637 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: FTO(intragenic)

Timepoints:
e12.5

Element tested at E12.5.

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GATTCTCACATGCCGCCATTaaattggtgaagcttatttctcatccagaactcctagctg
caaaagggtctgagaaataatagtgtttaccttttcatcctctgcaccataggaaggcac
aataagaggagattggaagggtgctgagtgccaccatatctacctcttcccccagcatgt
ttaaaataaaatatctttacctccaactcatattgcattttctgtccagcacagcaacta
gcttagtgggccctcagtagatgtgttaatgacattgacttccttatttcttatatggcc
ccacctttcctagtcacgtgtcttggtactatgtgagatttcagatccacctgcctacct
gtaactcttgattccttttcatttccattgctgtctccttgttcaggtccagctcctgtc
tgcctgggcttttgcagtagtctccttatctggcttttggtttctttcaccgtaaccata
ttataagtagattggtgtttaaaaatcagaacaacaaataacaaacatccttccactgtg
ctcctgtccttctcaaaagctttctgaggctcctcattacatgcaggatagaatccagac
tccttagcttgactttcaggaccttccataatcagggtgcaatctatcattccaggctta
tctttcattttccccctgctggaactgaattttagccaaaaggtctaatcactgatgtca
gagtgtcttgtcctttactaacttttcagctctgctatccttttgcctgcttttaatagt
ctgttttctttctcatttgtttattcctttgatcacttaggcacagagtttttttctcct
ttcttcatacttatagcatggtttactaaggcattttaattttattacctatatcgttag
ttttctttttatgactatatactctccgctcctttttatgtcgacaatgtaaatatttgt
tgtggattgatttgttgatttttcatggtttagacatctacttgcttgggaaaaagggga
tggtggagggtcaatctgggggctgaagcggtactctagctgtgtgattttgtctttttg
attactactgaaattaactatttgctttgagcaaactaatgctgagttttgtggatttag
tgtttgaaaagggccctgagagggaaaaccctggagttgagctccttatccccgtttgcc
aggctggatgagctccatgtccataccactgcattgcagtttgctgaagtgtgtgttgtg
aaatagcaatggaatttgtctgtggtttcttgccagcgaggaggaggaagaaggattctg
agtaaatcagacatgtaaattagtaaggcccatgggccttaagcgaattacacaataaag
cccaaagaaattcactttggcttctttctgctttttgtgtgtgtgagaaggcagctatta
tgtgtttgctttaggccagaggttcacaaattttttggcttcagaacccttttatactcc
taaaaattgttgaggactcaaaaagcttttgtttatatgggttaaacctatcaatattta
ctgtactgggaactaaaacaggaacttttaaaagcctttattgatttaaaaatagcaaaa
ccccttcattacaagttaatgtaacattttttatgaaaaataactcttttccaatgtaaa
aaattagcaagaagtgtgccattgttttacttttctgcacatctctttactgtctagctt
gatgcttgattcttatacttttttgtttagttgttgaaatatgttgttttggttgaagta
tatgaacaaaatctggcctcagacattaatggaaaaagggagtattttaattgcttcttc
agctattaaatgtagatattcttctttgatattattccaaaacttgtcaagtgatagctt
ctattttaaaacatttttgtttttaattgacaataattatctatatttatggggcatgct
gtgatgttccatgtacacattgtggcatgattaaatcaagctaattaacatatctgtcac
cacacatacttattatttctttgtggtgagaatacttaaaatctactattttagcaaatt
tgaaatatacattactgtttactagtcagcatgctgtgcaacagatcactagaacttagg
tctcctgtcaaactgaattttttaccctttgactaacatctcccctttctctgctctatc
ccaccaaactctggcaattactgttctgctctctacttctatgagtttgacttttttaga
ttccatattttagggagatctgtacctggcttatttcacttagcataatgccctctagat
tcaagattcatccatgttgtcacagatgacagaatttccttttgtaaggctgaatattat
tccattttctttagacaagtgataatatcttaaagcttacttgcagtgtggaatccgaag
ctatctcaattaacttttcttactttgttatattaaaatctgttgatctcttttgcactt
tgaatgcatcttttacattcaaatgattttgtaacattacgttttgatcatttggaaaat
tatcatgtcactgagttatacagatcttccaaatgttgatgcatttcattatacagtgta
aaaaaaggtcacactcatcagtatcaccactgatcttatacaagtttttaagtattgaaa
agcCCCAAGCTCAAGGTAGCAAA
Primer
(+)GATTCTCACATGCCGCCATT
(+)TTTGCTACCTTGAGCTTGGG


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