Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs2523 ]


Position: chr8:129,938,964-129,943,378 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR1208 - LINC00977

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGGGCAAGACAGGATAAGCAggttatagactggctaatttgaagatttttgacaggctct
agggcatagaggttgtccctaattgacaatgacctgacctgagggtgattaatacagggg
aatagtggcctggggtgtaaaaacttgataaaagaggtggttacgtacatggtttattgg
attggctggtctgatatgaagggtgcacacacagacaagttgttcactctctttaggaat
tagctagccctcaggatggtgtgtgtgtgtgtgtgtgtgtgtatgtgtgcatgtatacat
ttgcatatatatatagttatgtgtgtttttagattgaaaaagagagagtaatttttccaa
tggtgaagcagctgtctaaatataggagctgacctagcagttccatgtctaacatcaggg
caatatgctgtctaccctgcaagccattctgcttgtggtttggtgcttggcttcacgggg
tggtgaaggtctggcggagtgttagtgtctggtgcctgaagcagaggattacagttatta
tgagagtagagtcctcttgcttgttctgcatcaaaggctaaaaggcttggaaaagtgtcc
tacggagtgggaagagaaggaaaaagaacaaactatgtttcttggaattatgacttagat
ttgtttttaaatcattctgtgttcttgtttggctcgttttataagtaaaggagcattttt
gttgcagtggttgtttttgtttttaatggcgtgctttccacagatacacttttctatttt
aaaggtctgctctagagatctgtctgcaaataggcaagattctaaaatttaaagctaaat
aaattttagaacaagtactactttagagataagaacattgaagttaagaagtactttaga
gataagaacattgaagttaagagttcctaaagattcatgtttgattagaaaaccatctga
tattacaacccatgtatatggattctttcctttgcatcttgctgtgattatttaaaaagc
gtttcttatttttttttttttttttttgagatggagtctcggtctttcgcccaggcccga
gtataatggcgctatctcagctcactgcaagctccacctccccggtacatgcctttctcc
tgcctccgcctcccgagtagctgggattacaggcgcccaccaccatgcccggctaatttt
ttggccttttagtagagacagggtttcaccgtgttaaccaggatggtctcgatctcctga
ccttgtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgc
acccagcctaaaagtgtttcaacattactttgggcttcatgttttgtccttggtctacca
ctctttcttcaaagtctttcatacctcaagatacattgcccttgaaagccaaaccaactt
aaagtcgttgcataaatgtatggaacgttccataaatgtatggatcacacagttcatcct
tcaccctcctgaccatcacgaacccatccatttgtcaatggtcatctcaagcatggatcc
ttagaggatcattccctgacccaccctagtctagattagtgctctcattttgatccacat
aatggccatatgttattgattatagaatgttgaactggtggatttcttctttctctgctt
gactagactacacgttccttgaggggtaagtcactggctctaaagcctttattttaaggg
ctttcatactatttcataaacagaaatagtgtgtttatgtctgtgtggatgcaggtgtac
ttgtgttaatgtctcctgcattcaggaatagataaactatttccaagccacatttaaaaa
gtttgattggtgtgaagtagggtctaacttcattcttttgcaagcagctatccagatgtc
ccaccagcaactggataatcagttgaaaatagtgttctttccccgttgaatggtcttgca
tcaattgttgaaaatcaattaaccatggacacatggctttgttctggactctcaattcaa
tcccattgatctttacttgtacagtaacacattgtattgactgccattgttttgtagtaa
gttttgaaatcaagaagtgtgatactctgtagtttttttcaagattgtttttgtctattc
tgggccttttgcaattccatatgaattttagaatcaactcatcaatttatctgaagaaat
cagctgagactctaataaggcctgcactgaatctgtagaccacattgggggtattgtcat
ctcaacaatattcagtttttaaagtcatgaacattggatgccttttcaattatttaagtt
gtctataatttctttcaacagtggtttttttgtattcagagtatatattttgcacttatc
ttgctgcattaatttttacatactggattctttttgatgctattgtaaattgaatttttt
gctaattttatttttgtatcatttattctaagtatataaaaatacaatagatttttgccc
attgattttgtagcttgcaaccttgatgaactcatttattagttccaatagcttttttag
tggatttgttgggattttccaaatacaggatcgtgccatctgcaaatagaaatagtacta
tttcttcctttctagtctggatgttccttatttaatttacttgcttaattgctctcatta
gaacctccatcccaatattgactaaaagtggcaagagaaaataacctgttcttcttcctg
accttagagggaaagaacccattctttcaccattatatacgtgattagttgtgagctttt
tgtaaatcaggttgaagaagcacgcttccatccctacttcctggtttaatcataaagcat
tgttgaattttgtttttttatttagttttgcaagtctcatatactgtcatttgcatacag
tagttattcattaagtaataactgcaaattcatgtattcatgaatggataaatacaatca
gagttaagtgaaaaagtgatttcattagtgaattaaaggtaaagagaaataataattatt
taagtgattatactttcttaaatcttagttcatttcttatacatagtatagagaaaatga
ttaaaattataaaattttgtgttttgccaagttattgcagaatgttgtaataaacacaaa
gcatcaatatttgagaaagtattttttaataggagatgcttaacttgagaccatcgtgga
agcaacaatttttatctgataagcacttattttatttgcaaatcaaagttataaagagat
ggtaaatcattagatttctgttaaaccagtaaaaaaaaaaaaaaaaaaaaaaaggattgg
gctctggaagtaataaggttattcatttagaaaagaacctccgtattgtagttgtttgtg
aagaaacttagtactcttgaagaaagcagcctctggtgaaagcactccttatttttaaac
aaattgcctttcatcctttatttatttagaaggcttctaagattgtccaagtagaaaggc
acgtagcttctcttaagtagctaatatgagatgaacccaattacagtccagcctgactgc
aactcttcagtttagaaatgcacattgctcacagtagcacagagaatggccaagggaaga
ttcatgtgcttgccttggttgaaacaagcccattgttgtaagggaccaactggcttccat
ttagtcttggtgttgtaggaaatatataccaaatttgctttccctcctccttcctttttc
tttctttctttctttttttttttttttgccttctttcctccctctttctctcctttcctt
cctgcctcccttcttttcttctttctttgcttttatatttcatacatctctctcttcttc
ttgtactttatcttttctatgaacatttagtgtccctagttaatgcatagccttgtgcta
gacaccatgagaaataaaataaaaaacttagctattaatcgtgtttctctttatggaatt
aagaaatatatgcaaaaaagaaaaatgtcatcgaacaaacattaccaactctatcataga
ggtagtaactgatacaggagttgagattaaatggtgcagatggtggggagaagagtcaga
gctgggaagattttctagtcacctaaggacagggacaactagacttatgatctagttgtc
aaggcttggatctcagtaggtacagcctcctttccctgtctgcttctggaaagaattgca
cctaagtaagataccctgcttagtaaacagataactggcaaatagaaattcccgttacga
acaggctgccatataatttattttctaaactgagacacttttaaagtgaaacaggattct
caataattacaccagGAAAACTGGCACAAACTGGG
Primer
(+)AGGGCAAGACAGGATAAGCA
(+)CCCAGTTTGTGCCAGTTTTC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.