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Human element [ hs2513 ]


Position: chr18:49,022,569-49,026,479 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LOC100287225(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGAATCACACCGGATTCTGAaagatggatttcagacacaaaggaagcatgatcaattcag
gagttctgaggaaaattattactatcttactttctgagtgccaagaaagagaatcgtaag
taatttttaatatgactagggatttctttagtccatttggagaaaatgttttatcttctc
ttttatatcatggtcattttaagatgaagtattagcttttacatttcaatctcatgtcac
aaaatccaactttatcactttgattttatatactgtcttcagcacatttgcaatgagaaa
ttacagaagaattactgctagggaggagatttcaagacttccaaaagttgatcatgaagg
aagtataaaaaaataagcttctgaggtattttttaagagtttgcagagcttttagagctt
tgtgtttttctctagagcggggtagatgcagtttggaaaaggtaggtaactggacagagc
tctttgatcatattcattccaaggagtccccacttctctgattttcttcaaatactatgc
caataagatacatcctgagactttcctctatattatatttacatagtgcctcatttttct
ttctagactctaaacttattaagaggaggaagcacatcttatatacaagtgtccatcttt
cccagtatctaaccaagaatcctgtacataacagcactggataaataggtggatttgtgg
aagttgaacatcatggaaagggtgattccagatttctacacaagaccacagccatagtcc
atggtctagatttcacagtctagattttcacttactaactgagtggtttgaccctcagta
ttccgatcatctggaaactacgggtgattaacactaccttgcaggaaagattaagataca
cacatggtagagtccttacctggcatgaaacaagctccaagttacgaaagactttaaaat
accaaccttttacataatatggtgggtctttttgggaagggggttataacttacaatgta
ttttctttttctccctgattctcatcaattctatggcagtcatcttatattcattggaga
gtttgaggtcttaatttgttctcctttcaaagcaaaatctaagtattctttgtgtcataa
aatgttagggttggacagaaaaatttaagttgccttaagtccttcttttaatgcagaaac
tgagtctgactttactttggaagggtgcagagaggcctggaccgtcaggcctggaccgta
ggattggctaagtgaacaactgggaaatggagattgtgcagattctagcaggagcttgga
ggtgatggaggggaagggggacaggaatgagagaaagggaagtgggaatttgctaggtgt
tttagagataatgagaagacaagtctgactggtgagctagggtgggaaggtgaagacagc
ctgcatgttataaagccaacactgtgccaggagctttacttcatgttcatggcaattcca
tcacatccttgattctccattcatttcacagataaggaagcagctcataagagttaacct
gtcattggtcacctcaccagtatgttctcccatctatattattctgtgaaggttcagagg
ggaacaattcattaatattagatagaaaggttaggttggacaattttgtaaaggcttcga
agtcagactgaagagtatgtgctctccttataggcaatgataacactttcaaagttttca
gtttgggaggtaggtagggaatgaagtttatgatataataaaagaagtgagttaggaaga
atttaacctgacaagtgcaaatccctcagctcatctttgaaatgtcaggtttccactgta
gttcctgtcaatcctaatttgtttattaggttataccctttctccaaggggaagggagaa
ggtggagtgtgtgaggctccattgaaccacacttgcacttattaaaggcattgtaatgag
gtctaagaagttttccttcttgctgcaggcagaacccagagcagagcagggcatgctaat
gctttcttagcaacattgaacaatcgggcccaggataccattagcagcattcattctgca
tttttcatatctctccctttctaattttatcccctcaagtcatgtactaacttcagggct
agaaatgttttagctcaccattaatttctttcctgttgaggaatagaggtaagtcattga
cagtattatattattgcttataataagtttaatatgaaatagaattatgtgacaggtctt
ggcaactgtctattgccttgaaaattaacacctcacctccaactttgtgttgatatttaa
taagtgctttgcttcatcatttgtctttcagcagcactcttagccatcccattgtgcaat
gggagcagctgactgcttaattagccacgatgcatcttggcatgggccacctttcctttt
cacactgtgagcctgttaagttccagatcccctggcgttgccctctgaactgccaaggtg
accctgggaaacattttaagtaggtaaaagttgtagacaacatgcctctctttctagtgc
ctttatgctgaccctgggctgcctagcgatgccaaacacaaaggcttcagaaggaattgc
caaattctggggactttcttgtctgccttttactctattaaaacctgctgcttctttttc
ttttttccattgctgtagggtcttgttctcggctggatgaccatacgagataataagtac
aagtcagtccaagaaattttaatctccactaatcagtaggtaagctaatgtattaatctt
tccaggtaacacaatgcaggcaccttctctctgtttcttctccttcttatagagaattta
tagctttaaggcacctaacagaccattcaagtccaagcacctgaggttctgattcagtaa
atctgaggtggggttaggaatctgtacctggaaaaaatcttcagttgaccctcacatgtc
accctgagtaagaaatactacactctaaaagagagacgctaacattccacaatgcacaaa
atacttacattttgccttgaaagtagaacaaattaaaaccttaagctctccaaaaaatgt
aagatgactgccctagaattgatgagaattggggagaaaatgaaaatatattgtaagtta
taatccccctccaaaaaaccccatgttaaaaaaaaaaacatatttcttactcagggtgac
atgtgagggtcaactgaagatttttccagatacgtacacttaactccaccccagatttac
tgaatcagaatatctggtgcttggacttttggagaaacttcctaaactttatgaggaaca
tgtccagaaaacgtacagataagattataatccatggtgagaaactagatgtttcccact
aagatgaagaatgtggcaaagatgtcccctctcacccctccttttcaacatcatgctgca
aatcctagctaatgcaacaagagaagagggaaaaataaaaaagatatacagattgagaag
gaaaaaataaaattgtcattgttcacagatgatgtgattgtctctgtagaaaattaaaaa
aaaattaataaaaatacatcctggaactaataagcaattgtagcaggatggcaggatact
aggttaatatataaaagtcattcaatcactttcttatataccagcaatgaacaattggaa
ttcaaaattaaaaacacagtgccatttacattagcagccccccaaatgaaatacttaggt
ttaaatgtaacaaaatatgcaaataaaaacctgcttttttattgattaaaagaaaaagaa
atattactgtcatgagataatgatttttgaggctctaaagttgcaccatgGAATGCAGTT
GCCACTAGTCA
Primer
(+)TGAATCACACCGGATTCTGA
(+)TGACTAGTGGCAACTGCATTC


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