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Human element [ hs2512 ]


Position: chr1:3,337,000-3,341,930 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR4251 - ARHGEF16

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CATATGTGTGTGCCCTGGAGaggtcgggctgacgcagccccgcgcaagcaggaggaagca
ggcttctcatgggttgcctggagtgatagggtaatcaaaccagatgacattggaagcctc
ttccgtttaagtccttgcctcagatgacctgaaatcgttcagaatgtgtttcaaagccct
gaggtagggaacgtagagcctttggtgcaccaaatatgtttcttggaggtaacttggccc
ctagcttctcctggcctagaggtctttgagtgaagcgggaaggtgagattgagttaatgg
cagtcttatttcttaaaaaaaaagttaagcatataggctttgcgggatttgggttggaga
agcatgaaaattgaactgggagtggggagaggggctgctccttggtcttcgtcctgacag
ccggcccgggggtctctctgggaggctgcccagtggagcctggagtcacagcctggatgc
gagcagggctgcccgggactcctgctgggaccgagattcctgcctcagggctgctgactc
cctagtctgccgtgtgcttccatcatctccccaggctccatcctgccttctgtgtgaagc
tggagcgtgcaagggaggcacagttgtgcttccatcgggggctgcacgcggcccgtgcat
gtcctttcttttttagttgtatttttacggctgggtttcaaaatctcttctttcttcctc
ttccctcacttttacagtcaccaaaagcagatccccctgtagtggctgcaggagacctca
ctggatcctaggaaggatgccgctgcccagtgctcaggggctcgggggccctggccaccc
cccctgacctgcccatactctgttgttcccctgccaatggcttctctgggagtgcagcag
gcacggtcacagcaaggtcctctcaaggccctccgcattgcaccagggccaggctaccct
gcacgttctccttccttttggagctcacgggcgtgttattttacgcagtgagaccatcaa
tttcactggccgcttgtcagcttatttacaacgcagaccccagctgctcggagaactctg
ctccctcgcagccctgggctcacggctcccctaaatttcaaatggacttctctgtctggg
ccatttatttagattagaagcaagagagggccacgttcagggctctctgcaaccaaattg
aacgcacagccctgttcgtggctctccccggccccagagcttcacacaagggacttgctc
tccagttttatgaacaagcttcttttccaatcccatttcttacctcggatccacaattgc
tagggtttatgcaagagccattaggtggactttctgcaaaagtctctgcatttccaaaga
aaccaggaactgaatgagccgtgtttgagcacacatgcagacagacaggcagacacacag
gcaggcggacagacaggaagataggcaggcaaacagacaggaagacagacaggcaggcag
acagacaggcaggcggacagacaggaagacagacaggcaggcggacagacaggcagacag
acagacaggcaaacaggcaggaaggcagacagacaggtagatggacagatggatggacag
acaggcagacagacaggcagggcagacaagcaggaaggaagataggcaggtggacagaca
gatggacagacaggcaggcagacaggcagacagacaggcagggcagacaggcaggaaggc
agatagatagataggtaggcagacagacagatggacagacaggcagacagacaggcaggg
cagacaggcaagaaggcagacagacaggcaggtggacagacagatggacagacaggcagg
cagacagacaggcagacagacaagcagatggacaggcaggaaggcagatagacagactgg
caagcaggcagactggcaggcagacagacagtcaggcaggcagacagattgggctgcctc
aacatgccagaggggcacatggccccagctgggtgggaagcctctggctgggcagagcct
gaatgctcagactggcaggtgctttgcatccaggctggagacgcagagtccagtgtgtcc
tttctcagcagtcagtcagcctcaaaagcatggcggtcccagggccaggcaccaccattc
cagtctaaggatgtgtcagggtgggggatgtgagaaaatgcattggagggtgtaaaatcc
ctcctttctgggagattgtgtgggacacgtcgggtaggggggcacccaagcatctccaac
cctgctgccgaaagggctccatcctcggccttattcttgtgtgagttcacaggccgagtc
aaacaaaactgcagcgccgcccagggcaggctttgtggatggccagtccaagccagggcg
ctgcctgtcactgggctgtgggaggagacgctgggacccgggtgcccggaggcagctcag
ctgacccgggcaggagcaggggctcccagagaagaagcccacaggccaggcccctgggat
caggagcagagaaggctgagggtcacttcggggagctcagggacttcgatcaccaatgct
tcttttcctgtctactgttgaagaggccagagtgagcctggcctccggcaaaggttggaa
ggttcaggaattgagtggatgaagccttagggcagcaccagggaagtttgctgggacgaa
gtgggatggggatatgcctcggccaggcgtgggagaggagtgcccttctcccaggactgc
ctcccgttctctaggggacccattttcagacttgctaggttttaccaggcagcctgggga
gttgggggagactcgcaggctctgagattccaaggacagtttctcacggccgcagcccct
gcacgtggggaatgctgagctcctgggcccggcagcagcacccggaaggtgtgggactga
agcttcctgccttggggaggcccctgcgggtgtgttgatggcaggtcagactccctcgcc
aggcttttgtgatagcaaacaccagcccaggcccctcctgtacagggcagcaccgtgccg
agaaggccgagccacacagcccctcccggtctgggaggccaggactcccgagtgtcacca
ggcacgtccccatccatgtgacaagggcatgtgaccagtatgctgctctggagcgggcca
ccggcaccggtcggggcggggtggggcctctcggagtcctgtcctctgtgggaacgaagg
ccactgtgcttagaacagccacacccactccgggtgaacaaaccctgccccatcctggtg
cctccacagaggctcccacagaggccctggcctggtctccagctgctaccaggccccccc
ggccaggatcctgctgcagtgggtagactttctgtgtgctgtgccatgggcatcatggag
cttgctttgttttcaaaatatgaaaacgcatgatcatataaacagaatgttcaagtgcgt
gtgtgcctgtgggatcagatgagcaccgctgcgggcgttctgatgaccaagagcacacac
aagtgtgcacacacaggcatggcacacacgcacatgccaagcacccacgtgcaactgaaa
accatgcagtcagggttcccttcaccgtcgcccagcccagccgggtgcctctcagtaagc
cagtcccagccccccgccggatgccccccagggaggaggctgtcttcacagaggcagcgc
acgtgcatctacagagctcatggggttcctccttagctcatccccagctccccctcttcg
tttcaggcatgattttcttgctgctcaatgcacatgtcgctcaggccccctagttctcag
ccccgctctctaaaaatgggagagaacaaccctccctttccctgcctgcagggtcaccac
gtgtggctgtgaaggtcactcccagcccaagggccccacactgaggggaaccctccacac
gcagccctcctcgatcgctcattatgacgactttccagccgcaaggggccttgctctgat
aaactcagggtgttagagtcctgctctgcctgatgccgtggaggccagatggaggaaggg
ggtctcatcccaacttccccacgtgcacggtgcaggccggcagcagccctgcccaccctg
ggggaataaagataaaccgagcccgggagctggcagtgcccaaaggggccagtgtggtct
ttgtgtccttaatagaggaggcagccaacaagtggcaacatccagggcagcccccaagcc
ctccatgaatggactggcaaactgaggctccaagtgaggtggggcctgcccaggggcccc
cagccacctcgaggggtggaggaggaaggtcacagggagctggtctgggagctggtctgt
ggagcccctccggctgggaaactggccttgccgagtgtctttccatggagcaaggccgcc
ctctggaggctgcaaggagcatgtcgccctccggctgcagacctgccggccccgcggcct
gggggccagggagacccagacaacagagggcaggagacgccggagggtcgggcgcaccgc
ctgcccaggggacacggggcacactccagggggatccaccagccagccacagaacagtag
gagggtgaacgcctgcttgcttttttttttttttttttttgagatggagtctcgctctgt
cgcccaggctggagtgcggtggcgtgatcttggctcactgcaagctccgcctcccgggtt
cacgccattctcctgcctcagcctccagagtagctgggactacaggcgcccaccaccacg
actggctgatttttttgtatttttagtagagacggggtttcaccatgtcagccaggatgg
tctcgatctcctgacctcgtgatccacccgccttggcctcccaaagtgctgTGATTATAG
GCGTGAACCCC
Primer
(+)CATATGTGTGTGCCCTGGAG
(+)GGGGTTCACGCCTATAATCA


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