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Human element [ hs2508 ]


Position: chr22:39,685,736-39,689,733 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: PDGFB - RPL3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCCTCGTCTGTGTTTCTCCTtgctctcatcaggggctgggagaccggggtactgcagaga
gggtgccctggtcgcagataccaggggcactcaaccgagtccctgtgggtcttgggtaat
taattaatcattgggccgtttaaagattaacagcaggacggtgggagaatggcttaactc
atgataggggcacggaaggggagctttccctgtccctgtcgacccctggactctgtgata
tgagttagggggtatggaggctggctctgcacccccaccccttccttcctgtctgcccac
catccccagcctctcctggtccccaaggaggggggttctgagctcacagtgaggggcttg
aggcgtataagatggggccagaaagttccaggagcaagaaccagccgcagttgggcttcc
ctccacaggcactggctgggctgtgtggccttaggcgagtcactgcccactctgaacctc
gtttcagaggagggcactcacagcaggtggttgcagatgggaagagaggacgtccacact
gtccacgagctcagcgcacagtaggtgctcaggacttcctcccagagactcgacacccca
agtcttcgcgttgtgccccctcgtgtcagagccactctcctctgagaataatagtcaagt
tcattctaacccccaggcaagggaaagggtccctttctccagggccaggtggggaaggtg
agtcagcttcctcacctgggctgattcacacctgtgtggagtgcgggtggggaggagaca
gagactattcctcccttcgctctggggcagcccattccagcaggcctgagctggaagggg
gagggattcaagatgaaccaatacccccagaaggggtgatatggtcccgaggcccagaga
ggggcgaagatgcctgccctcacacagcacctcagaggcaacaccacgggcagggagcca
tgaccctgctcctttccccagctgctcctccactgttaggtaacagagcccagccccacc
tcccaccagcccacccagctgagccggccatcgcccctccctccaaaggtgcccaagggg
tcagtgagcccctgtgactcagggcgggaaagacccgtgaagtcatccagcggccggggc
cacctcctgaggctgtcctggcctctggtctcaccggcctgggagttccccagctgtctg
ctcccctggctgcaggacagaggcagccgccggtgtggatggagcatgacctcagaggct
cccagcccttggctcaatgccgtcggccccaactgcaggcctcagaggagcaggccccag
gcccgcccagcgccttcctcgtggccccaccacggagaagagtgaaggagacacctcgaa
cacagtgttggcgcagggcccagggcttggctggagagggagtcagggaacactgtgatc
atttgtatgatctgcggggcacccacctgagcagccaaagcttcatcactgtgctcatca
gaaaggcgacaaatggtgttgcccaggacccaaggccccagacactggaggaacagggac
acaggctcaaatctgaccttccccagccttgaggcttggaccccttcacgccccctctct
ggaccccttcacgccccctctctgggcctcagttttctcatctgtcaaaggagctggtga
cagctgcctggcctggtggctgggaggacaaaatcagtgtcccagcaggaaacagacaag
gggtatgcaaggaaaagatcttagagacctggctgaggggactagatccaagctgtgcta
atggcaggagctatttccaacccggagccgagggctctgacagccagtgagagctggagg
cagaaagagggctgagagacaggagctacagctgtaggggccggctgggatgaggaggga
gcaggggtcaccccacttctccccatggcccccctgtctgcagcgcctccccctggccaa
ccccactgcccagagagcccagttcagggcacagcccgcggggaggggcctgatgaaaat
ggcttcacagccacctcttactgagcacagccacggccaagcttcgtcctgggccctggg
gacacagtggtgcgcaagacagcccaagaccccattccacgaggagagaaagagggagag
tgaaggaggtgaattgggcagcaagagatgttttaatccaaggaaaaccctacagggcga
tcagagaccccttacacagacgaggccccgacggttggtggcacagggaaccgacgcctg
cccccatcactcttccaaggccccacagaggttgctcaggcttgcagggggtggggaccc
aggaaggctcggtcagccagcgcctccctgggccattccaggctctgagctgccgtgtgg
cggggtgggcaggctgccagccgagggagcccaccacaggggagccgtgtgcattcccag
acgggcacattcccgggcacattcctgccggggagccactctgccacccgcaccgccccg
cccgctccccgcacacagtgcccattgtctgcccagacactttgagctgccgccgccccc
ggcctctgccacatccccacgcctccctttcccgggtggggctccacaagcccaagcacc
cctctcctggtccccagccctgaagggcacctgccatttttcttggaaccaaggaaggat
tagaggagggaagtgacttgccccaagtcacacaggccaaatccaaatccaaatccctgg
acccccagtgaattactcttccctaagaacccttcctcctcccaaccctacacccctggg
ctgcggggcaccctggctcaacagcttagaccctgcctcctgagcacctgctgtgggcca
ggccctgtgccggcccctacaaccctgcctccctcacggggcccagcagccctgctgggt
gtgaatttccccaatatcacacaggaccaggaagctgactcagggcggggaggagtttgc
caaggccacccagcgaggaagccagtgagccgagatccagcccggcccacgcgctttcca
cctcctgcagggaacagtacagggcagagcctgctggggtgggagggactgtgggagtgt
ccaggggagaaagtggtgtccaaacaaagccttgaggggaagggccctgctccacaaagg
cgggctggtttgctgaagccgggtaggcctttgtttgctcattcacccagcatgtggatc
caagccctagacgaggcaccgggctaggatacaggtgagatacagggtgaggagtcagga
cagcctgacttcaggcagatgggtcagataatatgcactccccaggtgataaaaccaggg
ggtcggcgggctcggtggctcacgcatttaatcccaacactttgggaggctgaggcgggt
ggatcacgaggtcaggagttcaagaccagcctggccaatatggtgaaacctcatctctac
tacaaatataaaaattagcccagcatggtggcgtgcgcctatagtcccagctactcggga
ggctgaggcagaagaattgcttgaaccgtggaggaggaggttgcagtgagccgagatcgc
gccactgcactccagcctggcgacagagcgagactccatctcaaaaaaaaaaaaaaaaaa
aaaaaaacagggagccgctgagtctaaaatatcaagccccccttccttcccactccctac
ccctggtttccatctctccttagcgctcatggggctggttctaacccacttccatgccca
tcagtagagagtcactctactgaacttcccggctaagaggttttgcaggcgctgttccct
cccactgctgacacccttccccagggagcctcagggcttctccctcgcttccttcagggc
cctgttcaaacaagaccaccctataaaaatagcaactccacgcccacccccgcatgcagt
acgcatctccccctgaccCTGCACCCTTATTCTGGCTC
Primer
(+)GCCTCGTCTGTGTTTCTCCT
(+)GAGCCAGAATAAGGGTGCAG


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