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Human element [ hs2506 ]


Position: chr8:118,741,264-118,745,257 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MED30 - EXT1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTTGGATGACCTGCTTTCAAtactcatgtcactgtaagaagttgtgtatttatattatct
cattttattatctcatccctgtctgctttacaacaaggaagaaattgacacacagagaag
ttaagtaacttgtttaacatcaccaagaattctagactgggcttttggataacagggaca
atgtagctcccatatgtgtgcccttcacaatggtctagctctcaaaaaggatcactagct
caatgcttcaaaaagaccttaacatattcatttagtaaaatggaacttctctctgtatct
taccaaatcatgatcacatgaatctatacatgtttgatgagtatgtttgtgatgtataac
ttaaaagtgaaatttatttggtgagactctggggtcacctcacaaagaaagactggcatc
tttcagagaagctggtatggaaatgaatgcaaagctgtttggctgcaaattgggagagac
ctgctctatgaattaagactccatagactgagggaaacagtaatggtttcaatgaaaagc
tccaaatggaaaatcagatgttcagaatcacagatgttgatgtatcatcaagccgcttct
cacatgagcacctccacattgctctccaggtgagtggcaagtctccgggtgagtaactcc
agggagttatttatataattatggtcaacaattctcccaagcaactccatgtgggcttgc
aagtgtctaatatttgtgaagttctgccagctaatcttaccatttctcagctccagaatt
gtactacctgtctttctagcctagtgtttcctaagtggcaatgattttgccctttggggg
atattcagcaatatctggagatgtttttggttgtcacaactggtggggtcaggtgctact
ggcatctagtgggtagaggccagggatgctgttaaacatcttacactgtacaagacagtc
tcccgcaactgagttatccagtccaaaatgtcaacagtgccacagacctgtcttgttgcc
ttttataatccaaagtagctccctttggttctcacccaatgatgtgtcaagagtataagc
actgtccttgctgttgtttactggggagaattattgttgcattacatacatttcctgaag
ttgaattgggatgaatcattggagcaaaaatgattctcaggttgctgcttcagcctggca
tgctcttcataccctgtccttggggtgaacactaattccccttgaaactcagaagtgcca
cttccaatatgaagacttctctaacaccccacagggagaaataatcaccttttcctttgc
accccaaccatatcccgtacataattccagcaaagaaaccataatacttcattgtcatta
ttgttacaagcctgtctcctttaccacatccccattagcccttcactggagctcagagac
catgtcttactatttttcatttcccatgcccgtagcacagcacctggcccttaatagaca
tttaatgcacgtatttgaaatgaatgcattttcagggagaaatctggttctcgcagttgt
tctacattcagctactctaatttttaccataaatgtgactttcttctccagtttccaaat
agaataaaagccaagcaaactacgtggcccatccctttgccctcagcctcatggcccata
ttactaatgttcaagttcagaagacatttatccaaagccccaaaacagcaatatgaaagt
cctagtgatggtgggaaaggatgataaaaataggctgcttaaaaatcaagcacttttgca
cagaaaaaaaaggagaggcaaacagccactggcaccttcctgtgagtaacagaagtttct
attttaaaagaaaggcagtcaaataacaagcaactttatcacaatgctgctttcccagat
tttttggccaaggcaacacatcagcctggatcagactcttggcattccatgatggacccc
gctccaatgatgattcatagcagccatgtgaggaatggagactttcacacgaactcgcct
cttaaaaaaaaaaaaaaaaaaaaaagccagctattgctgatatctccagatatcagccag
taaatgcagctctgtcaagcctgcatgtggcactcaactttcctcggtaaatgacaaggt
aagtgatgaggtggccaaaggcctggcctctcagtggttccccatcattttactctcagg
tagccaggatgtttcctctcttggttcagtgttcaagtatcccagaagtttcatgaacac
agtggaaaaacaaatctaatccttgttttctttcttcactcttaaactttctttggtttt
gagtaatctgtgtagcttttggatggctttcacattaggaatttaaaaaaaaaaaaaagt
tccccttacatcattttgacttccaggtattaaatagttgagatgtctaagtttgtttgt
gttttcattaagttaacgtttctatcaccgtctgctcctgataggcttcaagaaaacaat
gctgaccatttaagaataaaacagcacagttcattggaaggaaacagaagggatgaatgc
tcctcgtagcctaaaccgagttgattatcattcttgggcacaatgttggcttcaagtttt
cctgaagctaagccagaaaaaagaacagattgcaagtgtgtgcatgtcaacactgaggaa
ttcggatattgaaaagcggggaggcaggcccccacatctctttcctgagaaaggctcagg
agcagggggagcagcctcctgtccctcctaagagtgggcggtcctgccctacacaaagtc
tggcgagaggaggaagtcactctgggactttcccaatgataatggcaacatgtcgctgga
cttctgtctaaatgacgtgctcaagggcacagatccaaaagagaaggtctagaacccaaa
atgagagcctactaggcaggacaagcagggtgctttttaggtctgtgatgcctgactttt
aaaaagcagtcccaccatggaatttctaaaattcagttgattctttcaaaatagcgaagc
caggttggtctcaaactcctgacctcaaaccctgtctctactaaaaatacaaacagttag
ccgggcatggtgatgggcaccattgcactgagtgacaagagtgaaactctgtctcaataa
ataaataaattaattaatttaattaaatagcaaagccctaacaacccagttgctattata
agtatctgccacttattaagcatttttcagtcaatcctcacaataacacaataaaaaaag
taaggacacttattaagagcttccaggtagcaagcacggttccatgctctttatgtactt
acatactttaatgcattaaactctttcaacaactccatggagtatttactatgaccccag
tcttgctggtgaggaagttgaggcacagagttatttaatggtgtcaccatcacaggagtc
ctgactgggggaggtccagtatgaacctagatttctatctcctagatcatgcctttattt
atttttaaataacagctttatttttatttatttatttatttatttatttatttatttatt
tatttagagatggagtcttgctctgtcgccaggctggagtgcagtggtgccatctcggct
cactgcaacctccacctcccggattcaagcgattcccctacctcagcctcctgagtagct
gggactacaggcatgtcccaccaggctcagctaattttttgtattttagtagagacggag
tttcaccatgttggccaggatggtctcgatctcctgacctcgtgatccgcccaccttggc
ctctcaaagtgctgagattacaggcgtgagccaccgcaccctgccaataacagctttatt
gagatataattcatatatggtataatttattcttttaaagcatacaattcagtgattttt
tagtatattcagagTTGTGCAGACATCACCATGA
Primer
(+)CTTGGATGACCTGCTTTCAA
(+)TCATGGTGATGTCTGCACAA


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