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Human element [ hs2498 ]


Position: chr10:43,551,890-43,553,889 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR5100 - RET

Timepoints:
e11.5
e12.5

published in: Chatterjee, S., Kapoor, A., Akiyama, J.A., Auer, D.R., Lee, D., Berrios, C., Pennacchio, L.A., and Chakravarti, A. 2016. Enhancer Variants Synergistically Drive Dysfunction of a Gene Regulatory Network in Hirschsprung Disease. Cell, 167, 1–14. Reproducible staining in abdominal region.

Expression Pattern
dorsal root ganglion (6 out of 5 embryos) 
other (5 out of 5 embryos) 

Embryo 1

Embryo 4


Embryo 5


Fasta sequence
ACCAAGTCCTGGCTGAAAACcccttgctgcttcccagaaacagcctggtctgacatggtc
agtggagaagagagtgggcctggtgcccacagccacttactgccttctctgggccccagt
tcctcctggtgaaatcgagagggtgggtaggatgcttcctggctgccccctctgtgcaca
actggtggctgtgggtcctggttgcccctctgtgcacactctgtggttgtgagtcctggc
tgccccctctgtgcaagcccagtgggtgtgggttctagtcaccccctctgtgcacacccg
gtagctgtgggtcctggttgccctctccgtgcacaccccctgatgtgggtcctcattgcc
cctctgtgcacacctggtgactgtgggtcctggttccccactccgtgcacacctgatggc
catgggtcctggttgccccactctgtgcacactcagtggtcacgtgtcctggttgcccca
ttctgtgcacactcagtggtcatgggtcctggttgccccactctgtgcacacccagtggc
tgtgggtcctggttgccccactctgagcacacccagtggctgtgggtcctggttgccatc
tctgtgtacaacctgtgattgtgggtcctggttgccatctctgtgtacaacctgtgattg
tgggtcctggttgcccctctgtgcacacccatcttgctcctcatctggatgaagtcactg
cccatggtggcctcatgcagcctgtgatgctgggctctcacttgctccactttccagatg
aggaaactgaggctcagaaaagctgtcccttgcctggatctgagcctggtcttgcagccc
agagctcttgccacctggctgcacccctggcagtgaccaaaattgttggtcccgacccag
acctcagagggtcagtgaagagtgtcctgggttggcttctcctcccctctgcaaatcctc
tcagcccacactctttcagcttctcacagaccacatgaaataatgtgatagatgcaatat
gagattaggagctgaacctcacccaggtcaggaaattccaagcgcagtctcccagctcag
ctctggctcccgtatgctgcccccaggtcgcagcggggtgtgcaggggaccattgcaggc
tgcaggggcacctgcatcctctagaacttcctgaagaccagacgctctgattttccaacc
agcaccagcccagtcatttccctctgcctccctggggactgtcccagccgccatcccttg
ctcctgcctccctggggactatccaagccaccatcccttgctcctgcctcatgcgggttt
cctctctagccagatcctccccgtctgtatccaaaaatactgttacttccctgtccttaa
gacagtgtgtttgactgctttgcttgtttgtttgctcctcttgatggtaaaactgctcca
gagatgtggccccatctggggttgccccactgaagccctccacagagactttgtgacacc
tgaccactaacctcacctcgctaaactgaggcagagcttggcaacagtggtgactcagtg
gctcagccctcctcttgaaacaccatcctcccgagttccaggacccctctgccaggcccc
tccctccttctccatcccccacacctccccccatcttcccgtggggggacccagtgctcg
tctctattcacactctacagactccgcgtgacaccaggccccacctctgcaccctccacc
tcaaggatggatacaccttccgggctgtacccgtgaaccccagcctccaggtctacccaa
aacctgctcaccatcaccttctcaggtacaaaaacagccctcttccctcacacccccacc
gcccaacctgtggtctaccttggaaataaacctcacacctctggtcatctctactgccac
cccactccccacccaaaccactcaacagccacctggacctgggaacatggcagctgctgg
AGGTCTTAAAGGCGCCCTTT
Primer
(+)ACCAAGTCCTGGCTGAAAAC
(+)AAAGGGCGCCTTTAAGACCT


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