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Human element [ hs2339 ]


Position: chr6:157,273,201-157,276,230 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR4466 - TMEM242

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
tAaaACGTGTACCAGGGTGGAAACccatttagtcaggaaagagttgaattgtgaagagag
tgtttttttatacatgtgtttttctttgttttgagggataggtgtgtgagtgacatttgt
aatttagcttgtttttctgggaagaagattgctgatccttgggtttaaagatgagggctc
aagattaattgatgagactagtgatggtctaaattttacagaacatgcatgccactaata
gcttaatagttaggatgataacagtttgtgagtgaatttatgtgctttatttttctcgaa
cttactgactttgaatacgttataaaattggagctgtgctcctaaggagtaacatggaac
tccatcataggtccacctccagcaaaaggctagcaggggtggtggggacactgaggctgg
cttgatttcccatcctgccccccatggttggtcgtgggaagaaggtcgggctgccgtggc
tcctgtgcactttggttgctgagagtggttgtgggcagcaggccggtgagcagtgggggc
agggatcttgacaccagcccttgttggactccacacccttctgaccattcatccaccttt
gggagtggggagcagggtctgttgaaagaggcagccgtgtcatgctcctgttagtaaggg
aactagacttttttgagcctaaaaccatacaagagaattcaacagaaagagaatttaatg
tatatattcattcttgtaaaacaataatattgtagtaaaacttacatctgtgtgtttgct
ggccaggctagtcatttatgactttcttcgagtaagcgaaaatccttggagtctggcaat
tcttccttgtagggaatcttcaagaagactttagctccaactttattcttttgtatttca
ttacctctgggaaaattactagctgggcattttgtggcattctcaacctcaactctaggg
ctagtgcttttaaaatctggtcaactgcgtaattgtgaaacagtactgtgtcagctttat
gcacttattattatttttttaagacacaaaaacttacaaattggcaaattgtttttcagt
gttttccccttcacagggctttaaaaatatcttgagtatgttggggttagattgggtggt
tggaaagcaaagctccaagtgctagaatggacggctgccctctgcagcttcaacacaggg
atccactcagcccccttagctgactactggtgcttaaaacggtttttgacaaacgccaga
gtttcacaaatatagaagtagcagttatagaggtggttttgcaagtcccttggaacattc
atgcaggtctgcagtcactcttaatttgaatgagaaagaagatggtagaaactattttta
ttttctcctgggagcaagagaaaaggaaggctagaactctgtactatgtaattttaaaaa
aagaaaaaaatcggactccattgagattctttcttgtttactttttgttttactctctct
gtctcctagtatgtttgactaatgtaagtcttcccccaggaatatgagaatatgtggtac
cgtccgcctcataaccttcctggatatttttataatttatcatcagctgacactgcttgg
gtagaatattcttaccactccctctggctgctggaagtctgaaattacatctttgtcttt
gaagtcaggcatactgttagcgttgctatggtgacagggtgggtaatggcctccgcagac
aggagattggtatttagcgtttaaacactgctgtacacaaggccttgatttttagagtgg
ttactgaactatccccttttagtaaatgtttaaaaattacatttttacatggtcttacta
gattaatagtcatggtttatttcattttaactgcaaggataaaagcattattccattaaa
tgggcagcttttttttctcttttggtttatgcattattaacacaggctttcctgttttgc
ttgtaacattttataggctttttcaaacacgcagtcagatttgctctgttgctcctttat
tttttggacttagcccattatctgcttgatcttggacaatttcagaggagacaaagttct
aaggaactaagcttttaaaatattaaaaatgaagttcttttttttttttaatgtatgagt
gataatattgatcaagatgtctctttggtttcaagtttctagttagcccctttcctgaac
tataccctcacatgagatagtaaaggaaggacagtttatggttctggagaactgttggac
attttgaaaatgctttagttgatgtaactttcgaagcaatatgctctgacatagtcagcc
tgtgtggaatgaggccgtttgcacacacatacatatgatttttttttatctgtgagtatt
ttgtctttagaataaagatgaatcttaatagtttgtatggtatatacaagtccctgtcta
cctgatacataaactgctactaaaacatcatttttaatgtcttgtgatacagaatttatt
actttatgaggtattttatttgtggtaatttaaattgtttaggaagtttttccttacatt
agctcgaactgttttttttgtttgtttttttaaatcctggttctacttctgccttcttaa
accacacaaggtaaatctaaatccttcttctatatgacggctgttcacgtatttgaagat
agttttcatttactaggatttcttctgggctattaatagttactttaactatttccccca
ctgtgtggtctcaagttcccctgcaccctattcttaattccttaatgagcttcatttttg
tataagcacctctaaatgtgatatccacaaccaaagggcaggctccaaaggcatggctgg
cggaggccacctggcccgctttgtgttggaccgtcacgctgccgtgtatcggaggcgtca
gggtctgcagggctttgcggcagctgcagcccactcttgccactgtgatgggagctgctc
tgaaggatacGTCTCATCCATCCTGCACCT
Primer
(+)caccACGTGTACCAGGGTGGAAAC 
(+)AGGTGCAGGATGGATGAGAC


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