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Human element [ hs2338 ]


Position: chr6:156,967,553-156,970,875 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: NOX3 - ARID1B

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
agaaTGAGCAGCGAATGATCTGAGccattcagcatagccaagcagtcctaggtaacgcca
tggcctggagggacagccctgctttacagcacagcaaaaccagtaaatgtaaagatgccc
cctaatccctgagataaggctacatcatgtgtgtggaagccattcgagaaggcaagagtt
taaaacattttaggaaaatcgccattcagaatgatgaaaacaaactaaagtttgacgctc
aaagaagtgatgtcagtgggctggaaaatgtagttatgtggaacactaaccccggatgag
gctggatgaatgaagtgttaccttattagtaatagtaataagagagcagcacaatggaga
tgagcaacattagtcaaactgcaatggctggacaaattggtgcaggagagaagggagaac
ctgagaaacgtagaagtcatttgtctctggaacagcttcacagagacgtggaggacccag
gctaccccagccacttcctaccacagtcactgactgctcagaatgtgacgctggaagcca
ggtgcacacctgtagtcccagctattcaagaggcgaggtgggaggatcgctggagcccaa
gagttcgaggccaacccttagacaacatagcgagacccctgtctgttaaacaaaaaaaaa
aaaaaaaaaaaaaaggaatgataaaaagaccagagtggggggtttttccaggtaatatat
ttatttcttgcagcaaacgcttggctcttctcctctaattttgaaacccctgactctggg
ttcctctgtactttggcactgccagcattagaaaatatatatgtgctgcagcctttgtgc
acagtacaaggctacagtaaaagcaaactgattctccttgtctggtatatttatgctgtg
cagcagaaaaccaataagtgcatgaccttgttccacacacaaatatgttcttttaacagg
cttctcctttaaggcagcaagtctgcactggctgggagaacagaatgacttttcctttta
agaaacgtgtacgatggtacattttttttttcagccattttttttgtcttttattttctc
ggtttcacaaaatatactcataagagcatatccctttttttcacatgatgacgttagcag
aaccatcgaacagaagggcttccctcccagggctgctggtttggttttatcgggtgctgg
aagtagacccccgcgacagagattcacaccaattcagattcttatcagttacattagagg
caccatatttctggctgtattcctatctgacctcttgactgtgttagtcacatggatata
tggatggacagaaagacaaataatgagactctacaggtcaataactgctttcaaaccact
actataattaagaaagcactggtttgatttttctgctcctacataactcttgtttggggc
tgagcaaagttgaaactgatttatgccacagcactccatgaataaagctttggaagtaga
aaagtgtagccacacatgttgtgtttaatttacatgtgtattaataagcactttgctcca
tgcaagagcccctgtgtgctacacaggatcgagtgtaccatcaacagtctgtggtcgaca
atcaccagaaacctgctctgtgccaagcactgtgctgggtgctgcacattcaaagacaag
cagaaaaagaaaaaggagaagaaacaaaaaaaagaacctgcaactgatggggcagtgcca
cacgatccagattcgtgaacaccgtttgtgaaaattgcttcaacatcgttctgtgtttca
aacggaaaaccaccccttcctccctccacccatgaatcagtcaagaacaaaaggaaatga
ttctgaatttttcctttctttccaagcaccttgggaagagccaggcatagagccaaaaag
aagaggggttttactaaggaaaaacaccaccctgtttggctttgatgggaaaaaaaaaaa
aaagaaagaaaggaaagaaaggagcaactgcatcgtgtatagaggcttgaatgatgtgta
tgagaagagtgtttttatggataacagccatgggcaaaacagcagatctaatcaaaagca
ctacacacatggatgttcccggcctctgggagaagggaactcttacgaggctgagtttct
ccatttttcttcttcaactcgacacagagagtagacagccttactgtgcataaaatattc
ctcacagccttcctgtcctccataagaaaaaaaaaaaaaaagactccatcactgagacaa
gccattaattccaaactaataaactactcttccctccatcacacaggtgagttgtggtgt
gactatccatgcggttccacacatgtgagcggccagaaatcgccacagctacccgcctct
cccttcttcagagcccaggaacccagtcctggctaggggaaacaaggaagctaagaggaa
tactcccccttcttctctccactctcctcctccccgtgcccctcctgctcccctgttgga
gaggctgactctctgtgaaaggcccccgtagggaccagcagtgatgggaggcagcagctg
ctgtcaccctccataggggaccatgttctcccagctcaggggtcttcactgaggtcacct
gctcaggttcctgttctccccatcatgggcccaggatgcagggctgctacgttttggaaa
atctgaacagtgaacaacagcctgagcagacagaagctgggaggaagtgaccacaggagc
cagggcctgggaggaggagagaggcactcctagcatgtgctgggaaacagcacgccagac
accaaggccagacaagacagtggggcaccgagaaccagtattacagtcttatccagaaga
attctgggtattggaaggccagataaaagataccaaatccaccaggaagcttcttgacta
gacttcaaatgggtgcattttgtgctttttttgtttttattttgttttgagacagagtcc
tgctctgtcgcccaggctggagtgcaatggtgcgaacttcggctccacctcaggttcaag
caattctcctgcctcagcctcccgagttgctgggattacaagtgcccgccaccacttctg
gctattttttgaatttttagtagacactgggtttcagcatgttggccaggctggtcttga
actcctgacctcaggtgatccgtctgcctcggcctcccaaagtgctgggattacaggcgt
gagctgccgcgcctggctgaaattgttgcattttgaaaccagatccacattccactattt
tctaaATCACTCTTGACCATCCC
Primer
(+)caccTGAGCAGCGAATGATCTgag 
(+)GGGATGGTCAAGAGTGAT


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