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Human element [ hs2334 ]


Position: chr15:93,458,856-93,462,478 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR3175 - RGMA

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGCATATAAAGAGTTGGCACTTataaaatgtacatggttatgtaaatatgttttgtgtt
ttaaaaatttaatagttttgaaattttctttttgatattgtgaaaggaaaataaatctcg
gtatctccaaattactaagccaaagggaaaagtcaagctgggaactgtgtcaggcaaacc
tgcctcccatttttttcctaaataagatagctagaaaaataaaaatgctacatacctccc
taacaatttgcccacagggaaattccttgtggacaaagaactcaaagccatcccctctgt
tcacctaagacaaatgcgtatctgattgcttcctctgccctgttgttttgctaagccaga
ctgaggcataaatgactatgcctctactctcttctcacatggaacttgtgtattcagtga
aaggctaatcaagagacttaaaagaatgcaactgtttgtctattatctacctatgacctg
gaagccccctcccctgcttccagttgtccggcctttccaggccaaaccagtgtgcatctt
acacatattgatgtctcatgtctccctaaaatgtgtgaaaaccaagctgtgccccatcac
cctgggcacataccatcaggacctcctgaggatgtgtcacgggcacgtccttaaccttgg
caaaataaactttctaaattgattgagctctgtttcagatacttttgggctcacagtatt
tacagacataattcagccctaatctagctgctgcatttagttgcatagtgtgaatatttc
acattttacttttacattttcataaatgggtatatggattatttaggttttgttatgaac
agagctctgaatatttatttgcctcgtcctatacaagtttgataatttgtctacgttaca
tgcccacaaattgaattacaggattcatacacttttttatttttttgagttggagtctca
ccctgttgctcaggctggagtgcaatggtgcaacctcagttcactgcaacctccaactcc
cacgttcaagcgattctcctaccttggcctcccgagtaactgggactacaggcgcgtgcc
accacgcccagctaatttttgtatttttagtagagacggggtttcaccatgtggtccagg
attgtctcagtctcctgacctcctaatctgaccacctcggcctcccaaattgctgggatt
acaggcatgagctactgctcctggctgattcgtatacattttaagggttactggctattc
ttacaattatttaatactaagagactctaatttctgcaaagcagatgagtgcaaaataac
cagttataatgtttcccaagttaacagaggtttagttatttttaaaaatgagtttattgg
ccatttcagtttcttctccgtaattgcgtatccattttctttgtgcagtttttggttgga
tttttgataggtaattcttcatatgttgtgtatctatatactttgttatgtgtacattga
aattttgtttcccagtccgtctgggaaacaagttacttgtcttttaaccttgtttatagt
aataacttattctgaagaagcacaggacttgaaccaaaggtggagagtttaaagaactac
atccagtattctttaccaataagaaatgtgtggccaggcgcagtggctcatgcctgtaat
cctagcactttgggaggccaaggcgggcagattacctgaggtccggagttcaagaccagc
ctggccgacatggtgaaaccctgtctctactaaaaatacaaaacaattagccaggtgcag
tggggcatgcctgtaattccagctactctggagactgaggcaggagaatcgcatgaaccc
tggaggcggaggttacggtgagccgagatcacgccactgcactccagcctgggctacaga
gcgcgacttggtctcaaaaaacaaacaagcaaaaagaaaaaaaaggtgtgaccagtcagt
cttctttgcttttccatcttaagacacatagaagtgactgagaaggaatagttatgcaat
gacatcggtttaataatcagttcaactgaagaatgtatgtaaataagggcagtgatacct
aacgctgatagttgatagtgtggattgcataattcagactgtggggtgatatcttacaca
cgcacatacacacacacactcttgggctttgtcttctttataggtaaggattaggagaat
tttgacatatgcctgacacaaaagtgctccgtaaatattagctattgtatcactggcagg
aagttagcctggaaataagttttatggaattccagtgtagattgctttgtgattgttttg
ccagattttgctttcacccacaaaaacactaagctctgccaaccagttcggccattttgt
aagttagcaaaataaacactaaagtgaaatggcggcttttgggcggggctcccacaggct
ggctccttttaagtggaatgttgctgtgctgccctcttgtggccatttgggaaaccgcga
ttaaaaatggaacagtaagtgttaatggcacttcgtttcaaagtccagttccaagaaggt
taatcactccgtttttacctacttcagaaagtattttgaagagataccaaattcttttta
tccacaagcaaaaggaagtggtaaacctttttctcatcagcatttatttttgattggaat
ctgaattcccagttttgacttgtttttttatctgtgtgttgtattttccttttaattatt
tgttaagtaaaaaattataaaagttgtttgcaatttagatgttgaataattttcagatag
ttgtttttcgtgaagattctgtatatatgttggatagtcattcctgaaaatccaatgttt
aattgccctgtaactagtaagccactggtagtcagctaattttattactttgttatttag
gtgaaggcttaaaggactccactcactaactcagtttgaccctttctattagtcttgtgg
gctttctgcctcctctactaaaccagcactaaagctacagcttagtactaatagtattta
ctattataattattaggtattaatggcaattctacatagtcttttaggaaatgtcgtttt
tttaagggaataatatgaatatatatatacgtatatatacacatgtacgctatatataca
cacatatatacacatatacatatatatacatacacacatatatatacatacatatatata
tatattttttgagacagagttttgctgttgatgcttgggctggagtgcagtggtgtgatc
tcggctcactgaaacgtccacctcctgagttcaagcgattctcctgcctcagcctccaaa
gtagctgggattacaggtgcatgccaccatacctggctaattgtttttttagtacaggct
gggtttcaccgtgttggccaggctggtcttgaactcctgacctcaggtgttccacccgcc
tgggcctcccagagtgctgggattacaggcttgagccaccatgctcggcccataattaca
ctttttttttttttgagacggagtctggctgtgtcatccaggctggagtgcagtggcaCG
ATCTCATTTTCCATTTCCAGtTt
Primer
(+)TGGCATATAAAGAGTTGGCACTT 
(+)caccTGGAAATGGAAAATgagatcg


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