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Human element [ hs2332 ]


Position: chr2:166,095,834-166,097,989 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: SCN3A - SCN2A

Timepoints:
e11.5
e14.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
agatGGTTCCACTTTTGACCAGGAgatggagctgtcatgtaagatgctgcctttatttat
ttatttttctaatttagcatgctgttttctaacagacattgggtaccatcgaatgactgt
cagaacagaaagctaaggcaaaggagggaggatgctgtggtcatcctttcttgttttttt
cttctttaatgaggatagagcacatgtgagattttactttctactccagtaaaaattctg
aagaattgcattggagactgttatattcaacacatacgtggattctgtgttatgatttac
atttttctttatttcaggtaagccagcatgattctatttttgacttatccacggattgtt
atctatgttaagaatgacatttaatataagatgtgtgctttgttagcttgtattcagatc
taagagattcaaaagctctaattctagctgttgtgcaatttaaaatcttcctaggctgaa
atgagctctgactatgacataccgtgttttattatttctttggctttctagctgttggtc
tctgtctctggctgtatttgtttaccttttaaaggtaaagctttcaaagtgaaggatggg
ttttcctttcacaagggaaatactgctccttaatgcagtgaacaaattgtagagatataa
tgaagcagattaacatggcagtggctctgccaaagctcagggctgagccttctgattgca
gcctcagaggcaagccaatattctgagtccaaaggccttttgaacgatttctgctggcta
tgatggtacagattgtttatgtctttatttttacctcttagaaataatacgtaagtcatt
tctcccacatgaatcaagatttatgtaatgtgtttaatagacttggaatgagactataga
ccctccctcctcccccagtatggatgtgaggagtatgctgaacacaaattaattgccatg
aaaattgattttttctgtattttattggatttgggataatagaaccgtggccattttaaa
tagttgatattatagaaggtgctcacattttaaattattttaggtcatgtgacattatct
gtgttaaagagtggaatgactcaggaggtggaagttgcatgcaacagccttgcttctctc
tgctgcttctcgtgatttcccttaaatccttgcttgattattattagaataacaggaata
aagacatatagaaatcctatatttaaaaaccactgattttcatttagagaaatttaaaga
gattttacaaatattttaaaaatagttttgtaagattgtttttaaatgcctcacttcttt
ctcctgtggaaagagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatggtgga
ggtggcaggcggtggaggtgcatcaggatgtttttatctcagtcattgttttcctgtaaa
gaggtagttttgccatgtcagaggttgtgaaagctatggggaatgattttataaaatggt
ttggacaaaccatgaaaaaaacatgttttttaaatgtgtggaatctatagagtttgtagt
tctacatggctccatatacatggagatttttagaattacagatatttaaccatttatccc
cattatcatttaaagaaaagcaattgtaattgagagataaggtggatttcccagagtcac
gtactaaattacaataaggcaaggctagaacagtgattgacagttccacatcttccatag
cagtaacacaattcacctctagtgtgaacatatcaggatggcatagaccaggtatgatga
tattcactgtgcgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgtgtgtgtttggttatat
tctgtaaaatagagtttctttcagtatactgttgctcaatggcatattatatgcagtgct
caattttcttaggtttcttgtcaaagcatccaagaaaactgaatgacaactatggaaact
ctgtttcttagtatgcctttttcattattaggtggtgtatactcttctaccctatgctca
tgaatgatgtggatggccacatggctttccctcctacctaatagaaaagattgtacatat
aggttaatctattgacaactataagaatatcatctcATGTCCAAGCCTTTCCTCCT
Primer
(+)caccGGTTCCACTTTTGACCAGGA 
(+)AGGAGGAAAGGCTTGGACAT


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