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Human element [ hs2331 ]


Position: chr2:166,981,977-166,984,957 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LOC101929680(intragenic)

Timepoints:
e11.5
e14.5

Also tested at E14.5 and showed no reproducible activity.

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGAAATGCCTGGTTGGTGACgtcctagaggtaacaccaagcaagccccagattttctctt
cttcgtcagcaattcccagatgaggtgctcttgtgtttaccctctctgattgtctggatt
ccctgatagtaccctctatacaaggaactagaatgtttcttactggattcctctgttggt
ggtgatagagtttactttgggtatctagtcggtctggttgcccctggtatctctggttgg
tacaacagaatcctgactgagctccttagtgccttcttgaatactgtataattaactagg
cctccaattgtgccccgccttgccccagcccatagatggacaatccctcctgccatgtct
taaagagaaattaccataataaatgactctccagacagcacatttcccagcaagaggggg
catgtaaaccaagtctattagtattggcagcaaaatccaatgtgttattgttaccagtat
gaacactctgggtatcctggcctcctatatagatatttgaaacaaaacagacaaacaatg
tgaaggaaggaggaaaaacagccacacaaatgagttacagtgagtttaatgaaaactaat
tccattgctgggtccatgtgatataaccagccacttgtgctctgttctagtggtttataa
tgttacctcaccctctccaagaaattggtttcccgtaaatctctgtggccattcattcct
gtctacacattatgttcctaaaatagacaccagctaaaaatctcttccaggagctttgtg
aaggaaggcctaaattgcaaaactcctcctagaagagagatgtgattttgtaattgcttc
attgcaattacaaaagcaacaatcataaaagagagttttaaaagagtttttcaccacagt
cattctcctgaaatgcacagctgagggaaagaagaatgtcagatgccccgcgaacgtgca
gaagctcccagttgcatcaccctggcgtgccaggtattgcagcaaataggaaaggtaagc
tacccacttctctgggcaggagaaactaaagcaggaatcaccaacctcagcatggaattt
tcctatttctgtctggcaacatcctcttgggatgatttaaagtgctttttggagaaatat
gttctgttactatactagcgcatcagaaataccacgtgaacctgtaaatccatagaagaa
gaagacacattttataggtgtgatagcaacagcaattggcaatttgcaagtttgctactg
cactcagaaatatttagtcacatgcacatattgacagtaatataccctgccttgacttaa
ttgttgcattggacaggtgaaaagcacatacccaccactccagaccgatttgttaacaat
caccagtgagtaatcaaagagaacaaaaagaaatgagaagtaaatgcagcaagtgggtcg
ggtctttaaacacatacctcaaacaggtaggagtcaggaaatccatgatagcaaagacat
ttggacaagcctcacctccactcagaaataattcttatgctgttctgaaaagcaagacgg
ttcacactaggaactgagcagtatctgcagtatcattgctggttgtgacctctgtctaag
taaaagtaagtcaatgtttcctatttggcattggatagaaaaggggactctttaccactc
tgctcaagctcttttttagtgtggctcaataggagttggcagaggtggggggcggaaatc
attgccccttccttgttcaaggcatgaggcatttcttctcaaaagcccagcctcagcctc
aggaagctgaatacccctgcaatgctaggctccagcagcagccccgctgccttctttctt
cctgtggagttaaaactgagatctaatttttgctccgtccttaagaacaatatgacctct
attcccagccagctagtccacttccaaagcaccagtgaaggagggggcttcaacaggatc
aaaagggaccttgaataggatgaaggcaagcaaaggcaagaactggccagatgccaagct
atttcaggccaaagaatcccatcttctatcaaaatgctgaactgcaaaacaaacctgatt
tcagttcatggaaggttgagagaggaggggggaggggaggggaggagaagaggaggagag
ggaggagggggacagttggtctgaatacacatacaaaaatggacttcctgctctgcccaa
actgaatttccatggactctttttccaaaggaataactggaatgaataaacttaaaatca
agatgaaacaattagatggcttacctgattaaaaggaaaattatccatctgcagtgagga
acagcatcacccaaagacgagatgataacaatgtgccttcagttgcaattgttcagattc
cttcttgcaaaaggtgtcaaagtatttacaagggctgcagtctcactggggcagaacaca
cagacacacaaacacacacaaacgcacacatacacacatgcaccagagacctctgcagta
tcctctcggcttcatcctcgcctcactctatggtacctaatacaaatcagcaaatagctt
gtttcaaaaaaaaaaaaaaaaagtcaagacagcaccttacattacatcgccatctagtgg
ctaaatattaaacactttctcacaatccagatttatgatttcttcctcaacctcttttct
ctcagccttttttcctttcttctctgtaatctcccagtattgcttctccttgcttctctt
tcattccctattgctatataatatcatgaacctaatgactcaaagaggaaaaggtttgaa
agtaaatatagctattttcaagtagtacttgaaaaactttagcattattttagtttgaaa
ctgttactttattcctaatatgaatcattgttatctataaaaatgatatatcttataaat
aaaactgtctttttattccACCAGGAAACAATCAGGTGGcc
Primer
(+)AGAAATGCCTGGTTGGTGAC 
(+)caCCACCTGATTGTTTCCTGGT


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