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Human element [ hs2327 ]


Position: chr10:43,447,274-43,448,627 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: BMS1 - MIR5100

Timepoints:
e10.5
e12.5

published in: Chatterjee, S., Kapoor, A., Akiyama, J.A., Auer, D.R., Lee, D., Berrios, C., Pennacchio, L.A., and Chakravarti, A. 2016. Enhancer Variants Synergistically Drive Dysfunction of a Gene Regulatory Network in Hirschsprung Disease. Cell, 167, 1–14. Reproducible staining in abdominal region.

Expression Pattern
dorsal root ganglion (3 out of 6 embryos) 
midbrain (mesencephalon) (4 out of 6 embryos) 
other (3 out of 6 embryos) 

Embryo 1


Fasta sequence
ATCAGGTCCCAGGTAACACGggcttcagcgggctcaggctggggaggggacaggtgtctc
ggactgcgggcggaggaaccgcgcacatcagagggcagcgtctcagggcgggctgggatc
tggggagggattcgccaggaggggtcagtggcccaggccttccaggctgagtggcgctgg
gcagaggcacgaccaaaggcaggaggctctgggactatttagggaggagggaggctcacc
gaggacacagaggccaggctgggaggtggccaccagccaggggcggggcagcaggtcagg
gagatcggatttccccagctcccactggcccgcgccttgcaagccggagatttcccctgc
tccgtggaaccctaacagctactctggggccttgcgccccatcccaggaggcccaccccc
tctcccggccagttctaccttctctgtctcagcaacccccacccttgcgactgaatgaag
cactctgaacagagaccttttgaaaaaagtctaaatgtccccttcttaggtgagggaagc
aaaagggaaaaatagaatcgacaccaatgacctattccagtctcccctcccgactgcaga
aaccagcagagccacatgggcccacaggcggggcaggcccagctgcaggcaccaccctcc
tccctgtcctgagccgggcttgctctcagagcctgctgctgtccccaggctagggatgcg
cctcccagcgggaacccctgtggagggaaagccccgcccagcccgaagctcagtcgcgag
gaactgccgtctgttgagcactgccaggtactttttgactcatgggtcgttttgctctaa
catgtgtatcccttaaaactcagaagagagtctggtcttgtttactcgcggttttttttg
tttttgttgttgttgcttgtttgtttttcttttgaacaaggaggaagaatatctataggc
aggaagtccccaactgtcctagtccccaggctgctattaaaaagtaccatagactgggga
cttaaacaacaaacacgtctaacagttctgaaagctggagggccaggcaaggcgctggca
gatccactgtgcggtgaggcctctccttctggctcatccctggtgccttctcctgtgtcc
tcacgtggtgggcaaagcagctctctgaggtccttgtgtaggggcaccaatcccattcac
cagggcaccgcccctgtggcctcatcacctcccaaatgtcccatgtcttaatgccatcac
catgtgggggagggcttcaacctgtggatttcagatacacactaggcccacagcacacac
tcaggctgaggcctGCTCTACCATTTCCGCAGAC
Primer
(+)ATCAGGTCCCAGGTAACACG
(+)GTCTGCGGAAATGGTAGAGC


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