Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs2326 ]


Position: chr10:43,581,812-43,582,888 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: RET(intragenic)

Timepoints:
e10.5
e12.5

published in: Chatterjee, S., Kapoor, A., Akiyama, J.A., Auer, D.R., Lee, D., Berrios, C., Pennacchio, L.A., and Chakravarti, A. 2016. Enhancer Variants Synergistically Drive Dysfunction of a Gene Regulatory Network in Hirschsprung Disease. Cell, 167, 1–14. Reproducible staining in abdominal region.

Expression Pattern
dorsal root ganglion (3 out of 4 embryos) 
midbrain (mesencephalon) (3 out of 4 embryos) 
other (3 out of 4 embryos) 

Embryo 1

Fasta sequence
AATGGGCAAGACCATCTCAGcttgaggaacatgagctgacagattgacttaaatttgcac
atggacatgatctgagtcactgccttgctgagtgcatggggacagttgcccaggccagag
gcaccagggtcaaagccagtggtgatgccctggccccgttgccccaggccagggccagtg
aacaatgtaatcagctggggcagactctacagccctgcagccaagggggccagtgaccct
tacatggtcatccacaggccacttgggtggccagtcctgttcagccaggccttgccctag
gaaagaaattaattataacctaattggcagtttcctttgcatagaagccggaagcaactg
ccagtgaggctggtgattaactctgcagcagctgggaaattgcagttgggcaggagcgcc
catcatcctggccaggccgctgcagctggtctgggtatggaagtgtgggtggtggccatc
gtgcagcttagggcctgggcccctcagagcagaaggctgggtctgtgtgcagaaggtagc
cttgggctgccaggtcccccagtgcccagttgcggacctccttctcccaaacctcagcca
tgcctggaccccttccccactcacggcagaaggctgcatggcttttaggggtgtcaggag
gctcatgtcctggttgcagttctaccatgggtgtgcagcgggaattctgggcttctgttt
tctggcatgggatggggtgaatgatatctctgttctacagcaggggctcagactggatgt
gtgagaagagcctcagttaaggagggccatgttcgtgcgtgcagggatcgtggtgcctcc
caggccagggccgggccccatctctcctcctcctcagctgctcttccagctactggccac
cctgcctggctggaggtccaagaggagaggtatctgaggagatcctgcactccacaccgg
gtctcctgcccagcattttggaagaaccaattcttaagtctggtactgaggccgcactgc
catgatgataactggtgtcaccaggacaccagggaagGAGCTGCCCTTGGTGTTTAC
Primer
(+)AATGGGCAAGACCATCTCAG
(+)GTAAACACCAAGGGCAGCTC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.