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Human element [ hs2322 ]


Position: chr1:95,548,541-95,551,861 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: ALG14 - TMEM56

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTCAAAGTGACCATTTTTTCAGtttttgacctataagtaaagtaaaggcaattatgtttc
tgcactaaacattgcttatctttgaaatctactaaattaattttctcctcagccgagtcc
tccctccccacaaagcctgtgtctggcatcctcattacgtttttattttctccttcattg
tgtacattgcccttttttctcgaattattgtctgccgccacagagctttttgtttttaat
agaaacacacaaattgtgtctcttcattttttatgtattcattattccttaactttatat
gaagaaaaagcatggcatacctactgtgaaaatcatatgcataataacacacactgccta
ccatttagtaagcatgtacgtactttctcaaccacctctcacaaccatcctatggtctta
agtactattattatccccattctgtaggtgaggaaatggaggttttaccatgttaaatga
acactgctggtgctttgacttaacttcctgtggatgtaccgtggccatctagtgacttca
ggaatatagtgatgttgcttaagggaatgtatttaacaacacacgttttacagtaagaag
gaggagacagcaaaatgaaaattacggatatgctacttaaaggttattattattttctct
tggaatttttgtgcaaataaccaataacacgttacaacagtagagagacagctctagcta
tgcctcttaacctggtttcttttcagcatttccatgacttatttaatatcctgttcatct
ttcatcaacattaggctgatgaatcttcatgaataccttctcaatttgttaacaaaacag
gtttgttaatttactgacagacttttttgatataaatctcaagtgacttagctatttcgc
aagcctaagattcccatctcctctaaaccatcactccagtgggctctttactgattatat
ttgtttgggataggttgaaatataacctaaatgaacctgagaaagtattcacactttgta
atactggattaatatttgcatatggaactgtggaataactgtgtcttaacttagaaatgt
agaagaatctctaatttccctttctgaaaagatgctaataatctaaacaaactcttttat
ggtcagtttcttacatcatttatcctttcctgaatcttgaaccactgactctgtctcact
gtgtctttacccttagcctataaaactagctcaagtctttcccattaaaaaataaaagca
aaaatcaataaaacccttcctcaatcagtctggctcagcaaagctcctttaaactgccag
acagtccagccacattaaaatggcactccagtctttaaaccacaccttttatctcttcgc
cagagtgcctttccactcccattctatttttacgcagttggactatgtcttggaactgaa
gccttctactgagcacagagcaaagttatatttcagatgttgagaggtgatcattctgaa
catgcagtcaggcagcctattcttggtgaattatatggatgttcctgtcagcatatggag
gaagcatggccctcccaatgactcagaagtcatatattgacacagacttgccctagaatg
acactgtcctgtgcatgctgggtacctctataatatactgacccaaagagtgtctgagag
cttggttgaaaactaacaggaacagatcctttctctgataaagcttgcaaataaatgggg
catattaggtttgtcttatcttggccaaccttccctgtcagctaccactaggtggctctc
cactgatctttctaaaagggttgagggaccactcaagaggggggatcttccagacttagg
tctcacaaggagaaccattctctttactcccctgatgccttctctcatccttgaatttct
ttcttccagacctcagtctggtggccttggctacctccttcagaaatattcaagcacttc
ccaccaaaaaatgtagacgtttcatctcggtttattcttctgtatcacaatgcctaagac
ttcatctgagtgagtacgtcagtaactgggggtttcagcggactgtgagctcaagcccca
tgaataaggttgacggtgaatctgccaatggtggttgaattctcataccaatgtgagaag
tgagctgtgtcacttagaatgtaagcactcgttgtaataaaaagcattcaatttcctcag
agacaacaaaatctaatcctttctctgtgaaataatattttttaaaggaattttggcttt
attatataagaacaagagattcctgctttctctactactttgaagaattagagccaactt
tagaatttgttgactctgagtctcttacggaagtttagaatggaaggtgggggagggggc
ggttgaatattcgagtttagtctgccaaagaaaggtgcctgaagtttataagatttactg
ttgctgattcatatgcttcttcagatgtatttgtttattgaccccttccacctcagttga
tgttctgaaagggtagggctttgcccaaactccagctgtggctaaggtgttttctggtcc
ttcttcatctctacacccaatttggacccctgactctccagggaacaagctatctatctc
atgcaacagtggcagttactgactgtgagagtggagatagagggtactatctctggaggc
cccaagatctggttattctaagttttaaccaacacattcaagagaagttctgaactttga
gaaaacttttccaacctaagatacagagcactctgtttttccggctgttcaagatgcatt
tcttttcttttcttttcttttttgaggcggttcttcttctctcttacccaggttggagag
cagtagcatgattgtagctcactgcagccttgaactcctgggctcaagtgatcctcccac
ctcagccctctgagtagctgtgactacatgtgcatgccaccatgcttcgctaatatttta
ttttattttattttatttttttgtagagacatggtctcaccatgttgcccagcctggcta
atctttaaaaaaattttttttgtagagacagggtctcaccatgttgcccaggctggtctc
aaactcctggcctcaagagatcctcccacctcggcctcccaaaggtctggattacaggca
tgagccactgtgtccagccaagatgtgcactatatgtatgctgggcagtagaagaagaac
tgtggacaaccctgggcagtagaagaactgtgaacaaccctagtcttttggactctgttg
GGGCTTAGAAAACAATGCCCT
Primer
(+)TTCAAAGTGACCATTTTTTCAG
(+)agggcattgttttctaagccc


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