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Human element [ hs2320 ]


Position: chr6:136,644,543-136,647,656 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: BCLAF1 - MAP7

Timepoints:
e11.5

Published in: Parker SC, Stitzel ML, Taylor DL, Orozco JM, Erdos MR, Akiyama JA, van Bueren KL, Chines PS, Narisu N; NISC Comparative Sequencing Program, Black BL, Visel A, Pennacchio LA, Collins FS. 2014. Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants. Proc Natl Acad Sci U S A, 110(44).

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTTGTTTGTGTCATCTCTGATttctttgagcagtggtttatagttctccttgcagagatc
tttcacctcccttgttagctgtattcctaggtatttttttttttgtgtgtgtgtgtgtca
gttgtgaatgggagttcatttgtgatttggctctcagcttgactgttgttggtatatagg
aatgctagcgatttttgcacattgattttgtgtcatgagactgctgaggttgcttattat
acactgcggttgtgaggttaaattcctcctttgggaaacttcagtttttgctcttcaggc
cttcagctgattggatgaggctcacccacatgaaggagggtcatttgctttacttagtct
tctgatttaaatgttaattatatcacacaatacctccacagcaacattcaggctatgctt
gagcaaacaacagggcaccatagcctagccaagttgacagtccagtgtaaagtccatcct
tgatacttctggtagccctggtcaagcattttcctctttggtctcagtctgcccatgtgt
aagagaggtggctatattaggaaggtttccagggccttccaggtgaaatgttcctgcttc
atccaggagacctgatgaccccaggtacaggcagtagaaagtactttgtgggctcctgta
cagacctcttccccaggggttgagcacccccatctctgtttctgtcagtgtctccctgat
tcttattctcctctttgcattctgccatgcacatagtccaaggggccaccagcccagccc
caaattggcatgttatgacaattccatcacccattacggattagcatagctgtgtccctt
aattcagattccagggagagacagtatttggttgctggccagccagctggatggctggag
ctgtgtcaggtaccaactccaggtttaaccagctctggttgggagcagaatcctttggcc
agctgccagctcagcaggtgctatgggaacagattcctggagaaaagccccgtggggagg
gaggcggccaggagataggggctgcccgggcagttcaaattgactgatgcgtccattaca
gttcctttacgcttaatgatctgctgccttgctgttgtcactgttgatttgtttggtctg
tggagactgtgtggaccacatggcattaaaccccacatcaagggcactcatgctgatcat
gacagccatggaaaggagtagagaggaaaatattttgagggcaaacagatcaagaatgag
aaagccgcttttgccctcactaatgaccctaaaatttactcaatgatccagaaaccctaa
aagtaaagccattagtcacaatgttgtcagagtaaaaaggaaagaaagaataagccgtgt
gttatcattttagaatccattccacacaagtgcccatttcaaacgcctgaatgcctgaac
catgcaggttgatttaattatcgtttgccctgcatgctatggagtcagccacatgccctg
cacaccccagcatcaggggatggcctgtgtcaagctgagggctcgtgcatttcctttgtg
cgcaggggctggggctttcttgcctgcccagctgagctgtcctcctgtcagctttgaggg
cagcggtgtccagtctccgacggtgatgtagacaggacctccgcatcacttctaggacat
ctctaggtggagagtgagaaagagagggagaatgctcaaacaggttggggggctcaagaa
cacctcccgtgagtggggggcagcccacttgggggtgggagcactccctgatttcctggt
aagttgccgcataatatgtaatcattagattatttgtttacttgtttctctcccctgata
gactaaattcacagagggcaaagctcttgtcttgactttgcaataataatagttttcatt
ggttgattgcctgctattggccatgttctatgttgaattctttacatatattagctctaa
tctgcatggtagattatcgctctttgacagacagggaaatggaggctccaagaggttaag
tacattgtccaaagttagacagctgtatgggacacagttggaatttaaactcatggactt
ttcatctttccaagagcctcttacatacgtgatgtctgcaccatactgagtattaaatac
atacctgtggaatgaatgaagatatacgcagctgcttctcttcctcttctctatggctcc
tctatggcctgttgaactttgggagacaaggttggctgttggcaaaatttgaaaatctgc
cctccctttctttgtgtctttcctattttgcaagctaccattccggacctagaagcaaca
caatgtagtggaaagaacactcaatttggatttcaacagagctggcttggaaccctggct
ccaccgaaagctctctggagttatttaacctctttgaacctcaggttccctgtctatata
atgagaataacagcacccatggcagaaacatggcgaggatttggtggcacaaggatgtaa
gtggcacctgggcactgggctcagaggtggtattcaggaagtggaagttcccccattttc
ccccagccaccttcatgcctgatctctgccccactcttgggctttagagacacgtgctgg
ggtcttggttcctggaaagataaagtgctacaaaaattaaattctagaaaatcctacaga
aaactagaaaactcggttctctgaactttagtcattaaaagtgtcacacgcaagggatga
aagattttaatttgattcaattcagttctgttctgcagacactggcgccacagcccctgc
agtaggcaatgagctggcctgaggacacagaactcctgtctcaaggtgttcacactcagc
tctgggggaaagacagctatgaagcaaatagtttgaaatgtagaacccttgggtacaaca
gagaactgtgtagtaggtcccaaagcggcacaatgggagcaggggcacagaagggcagag
agccaggggaggcctctcagaggatgaaatgaataaggtgagtattaagggatgaatagg
tgtttacctgctaggagaggaggtaggaaagtcacaggaaccagcctgtgaaagagatGG
AGAGGCCACACTGT
Primer
(+)tttgtttgtgtcatctctgat
(+)ACAGTGTGGCCTctcc


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