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Human element [ hs2301 ]


Position: chr6:85,895,615-85,898,006 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: TBX18 - NT5E

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGAATGCCTCACCTCTCCTTaattagtttgtttacaataaaatagaaattgcaggatacc
aagagaaaaaaaatatatatatatcatccaactatttgtatcaaaataagcattgcagtt
acagctttcatttacagaatgacaaagtaagaaacttgcagtcaactcatagcatttttg
taagtcagctacaaaatataacatgtaacactgtattattttaataacttcacaatgaca
tcacatttacaggaaaaaaagtcattgtgaaacatgatggtatgaagcatatgattctag
aatcaagtttcaagtctgcaaaaatgaagcatccagatctgccagtcttaggaaacattg
caaaaacatctttccctctggacaaagcccgggtttggtagacaggaagataaaattgct
attactttggaaaactcaggtactgaataagagtctagattggttgtttcttccttagta
ggtgtttaatgataaataggggatatttaaggccccaggtaacacactaacctgggaatt
ggaaagtcaactggttttgtgggctttgctggtaattggcttcatagcctaaagtagcta
cttgctctgtttaggcattgtggcatctataataaggtgttaaaaatccatgtctttttt
cccaggggactctaaagataggttttgtcatttactgtgcttggttcttattggacagaa
agtacaatgaaaatgttgttccaataaacatttaaagcccaaaagaaaaaagtctgatga
atgattaagcaaaaagaaaaatatctggaaacttatgagtcatctcccactctaatgttg
acatcttcaagggaataaaagcagtagcataaaaatcagtaagggaagcaatgtttgcaa
atagttgctttaatggaagaattaaaatgacaggcttgtgggatagcaggcagcaaggca
gcagaaggcttgaagaagagaaaaccagaaaagacacaagggaagaggatttctttatgt
gtgagtggacactaaccaactccattcacaaaacatgtatgcagcacttcctcaggcttg
ggctctgtattagggctggctaagacccagttcctgctttgagaagctaaaaatgagaga
gagaacaacactcaggaaaacaagttgccctaaagtttttgataagtgatattacagaga
tggttttaaaaaaaaaaagccacaggatttttttagaggggatcatggtggacaggaggc
aggactagattgcggctctggacagagcagcatatggaggcttgcactgtgaattttagc
tccagattgactgcaagaatccacagaccctctgaaggaagcagactgctcctgcaggac
ctgggagacattccaaatactgtgagtgccccatctgcagaagtgggaaagggagaccct
cctctcctgaccacacacccacactggagaagctgaaggtctttttgtgggagaagttcc
cgactttacctggacctgagtcaagttagagagccgagcaaaatacaggagtagagaaag
cagcagaaaggccctaggagcttgctgggtccccaaggagcccgttcctgcctggtacca
catggatctactgggagggtggccagaggagcagggagtaaaacttcacagggagaagga
attctctagctgaactttgtaacaattttaaccaggtgagaaggctcctggccagaactc
tgagagggcatgaatcaggcatgcagactttacaggcaggggaagaactaaagcactttt
ctcttgcatctgggaggtggacagccttggacaagttttcaagcccatctcaccctccac
ctggaaacagacttggggctgttggggaaagcatggtgggagtgagaccagcccttcagt
ttgtgagggagctgggtgaggcctgtgactgtcggctttccaccactttcctgacaacct
acatgaatcagcagaggcagccataatcctcctaaatacacaactccagtgacctgggaa
tctcaccaccatcccccacagcagccacagcaagacccatccaaggagagtctgagctca
aacatgcctagccctgcccccacttgatggtccttccctattcacccctatagtggaaga
caaaaggcatataatcttgacagttctagggtcccacccactgccggtccccctccacat
tgctacagctgatgccttctggaaatcaccacctcctggcaggagtccaaccagcacaaa
aatagagcattaaaccaccaaagctaagaaccctcacagagtccattgcaccttccacca
cctccactggaacagggactggtatccatggCTGAGAGACCCATGGATGGTt
Primer
(+)ggaatgcctcacctctcctt
(+)caccatccatgggtctctcag


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