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Human element [ hs2298 ]


Position: chr6:85,825,565-85,829,412 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: TBX18 - NT5E

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAgaAGGATGTAGCTTGGGGAGGTgtagggtcaggctaaggagtgggagggcctgtgtga
gacttcagtctctaaaaccccacagtgctgtgtccttctcagagccagatgtgatgaatg
gcattactgtgtgcacgttgaaagccaccctgattggatgcctttcagtggtaaattttt
aaaaataagtacttaagattctgtggttgggtccatcgtatgccaaccaaaccaggggaa
agaaaataacattgtcagtcaagcagctgcttgttccacatcccttgacagatttgtttt
tcttaatgaactgactggttactttggcatcacttaagagctgcaaggcaaacagtgaaa
ctcaatcagaaaaactttatcatttcagaatgaagataaaagagaaaacacttaataatt
atgtcacaagacaatgatagtagcccacgaacccattaatatgtgaacataaattggcta
atcagagtagctgtgacccagcaaaagaaactttatagtctttgataaagaataagaaaa
ccaggtcatccaaacaggaaaagacaggcttacagagagggacaggcgatatggtggggg
caggggaactgtttggactctgaaaacataaataggcaacaatcagatgtgattcctcca
agagttaattctatgatcttggtcgagtaccttttcgcatttagctctggtttcctcatt
tgtgaaaagggagtgataacctcaccttcccagattgaatagcagagtgagtgcaaagaa
tttgagtaggacttggcacatagtaagtactcaatcaaggttggaacatgtgctttctct
cccttccctgactcaacccatacctagaaacaccctagccagcataaaccatcactcagc
atggtgcgtttgagatcagatttttgttgttttaggaaaatcttagcttttgataggatt
tacctacactggaagtagtgaaagggtctaggccaatgtattcagaaattccacacatga
aagactgatgtgaatggtggaaagggccttccaccgtaccttctttctcccttccatgtt
ggccttcataagataaaggttgtttcagaaaaaaaatccatacccaaaatgcttcctcca
gacactcactactcaaaatgtactctcagacagcagcagcaacagcagcagcttaaccca
gaagcttgtcaaaaatgtagaatctcatccatccacctcccctgctccccaacatgcacc
cctattgattagattctgcaacaaatcccaagtcatccctatgcacattaaagttgggga
atttttctaattctaggccaattagaccaaaatttctggtgttggaacccagacaccagt
actttttaaacctctccacatggttttaatatgcagccaagtttcagaaccactgttcta
gtcgcgttagcaaaaatcaaccttaaaaaacacaaaaatacttaaacaaaaaagagtaga
aaagactattcttgaactagattcactgaaggaaagaagttttcaagtgtggcttaaaga
catctacgcttctacaattctagtgatggaagaaggagaactgagatacattttcatatt
tacaccttgcccttatacaagtcttggttaacaaatgcccgggtgggcagaacatttatt
gacataagtcaccgtgtttattgatgctgcccattttccactgattttagaactctgtag
gggaggtgctgtgactttgaaaaggctatttttataatcaaattgttttacttaaaggtt
tatgtaacatgctatactattaaacagtaaataaaaaccactgataaatcccgggttccc
cacaggtaatttggtacatccttaattatctggtttatgagcaaattgccacctcagctt
tggttctcagcttgttagatgcacgtgtgtgcacacccttgtcttgcatggcaaacttcc
cacagactcagggtttaaatgatgtcaaaacataatggggcgggggtgcgggggcagggg
aaagatgtagaaaataaaaggactgaagtttgtgttggagttttggtttttggtttttgt
ttgaagagttaatttgattttgattttcattgttgttgctgttattgtacattagggcac
actcctagacctaggggcctgcaaaaggtggccaatgacagctgactgcatcaaaagaaa
tccgtcctgttttgttaaactgaagttttttggtgaaagctgagatgcctctctcacagc
agtcccatctaggctacattctacctttccatgctagcaggaagatctaggaggctcagg
attgccttccatcaattaaaccttcccaaaaggaaaatcctctatgcttttgccctccaa
gcttaaaccaaataacattcttcgatggcattagatgacttttgtttgaacttttattgt
tctgcaaatatctgagttcagtgaggctccgtgtatgcaatcctctcttacccccaaatt
ccatgaaattaaagcttctctttagggcctcagtggctcacagcatcctgtgggctcagc
ctgatgggctccccctggtggttgcaccatgcctctcctctgctggtctcagaagagaat
ccctcttcagatttcactaaagacatccgggaaaaggaggccgagacagtcaagaggaag
ggaaacagtggggtatacagcttctcttggaatccgttcttgtaacaaaatttcaagaat
tagttttctgagtttgagacataatcttttttatgtcattttattcagttcccagcaccc
tttactgcccagatacgaaaggacataacactgtggatatttctgaaccctccccacttc
cctacaccatgggttcaggctgtttccacaaggcataactactattacaaaacattgcaa
actcctgcatccggtattgattaaacaatgtctggagctggcaaacattattaatatata
gaatgctatagagattgattgttctactttcatttttcttcttcctgccagcccctacag
gagaaagccctgcagctgttctgaatcccattgccagaggcatattatagctcgttttga
tgtttcaccagcaagttttgtgcctcatacagggacaaaccaaagcgaacatcccaagct
ccaactagaggctaaggcacaatcaccctgtcaggtattgttagtaagtcgggatcataa
aagataataaactctctcccatcttttatgacggcacaccaagatcaaacactttccata
ccacagcataaagcccccaggaccagttctccctgacagatgttcatctgctatctcggt
attgacgtgttacttaatttattgatccacagagagaaggaaatgcaaagactctagaaa
tctggtactgtacaagctgttttccagggctctgagccctagaaataaagtggagacttg
atgttgtgttttaaaagctgtttgaatattgtcattttattgtttttttcaatgtttaaa
ctaatttaaaaattggtcaaaaaataagttggaacaaaaaacgcttttattatttttatt
tgacttttactcaatgaagagtatgcttagcagtgggcaatgtggtttgttactccttgg
taactcactgacacttgccgacactcacctggccctgtcgatcccataaatacaaaaagc
ctggctcaccctagatttcacagaatgatgaggaatgaggtgaaataaaacttcctagtg
caatgctaagtaattcagtctttcctgctctaatccattccacacatgACCTCCAGACTG
CTCACGTT
Primer
(+)caccAGGATGTAGCTTGGGGAGGT
(+)AACGTGAGCAGTCTGGAGGT


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