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Human element [ hs2297 ]


Position: chr6:85,980,888-85,984,064 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: TBX18 - NT5E

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAagGGCCTGAAACGGATCATTTAgatagaatgtgaagaataagcctctctgggctggct
tctaacagaaggaaaggcacgaacccaaacaaaaataggacacctctaaaaatcaaacaa
catacctctttaaaaaaaaaaagtttttagattaaagtcatgtaacatacaattaaccat
tttaaagtacacaattcagtggtatttagtgcacttgtaatgttatacaaccactccccc
tctctagtttgagaactttttcatcaccccagaaaaacacaccatatcattctccctttc
ccccatcccccaggagccactaatctgctctctgactccatagatttgcctattccagat
ttatcatataaaatgaattacacagtatgtgaccttttgtgtctggcttatttcatatct
tttttaataatattttaatgtgttaccatcatgttttcaagagtcatccaaattgtaaga
tgtatccctacttcactccttttttttttttttcagtcggagttttgctcttgttgccca
ggctggagcgcaatggtgcgatctcggctcactgccacctctgcctcccaggttcaagcg
attcgcctacctcagcctcccgagtagctgggattacaggcatgcgacaccacgcctggc
taattttgtattttagtagaaacggggtttctccagttggtcaggctggtctcaaactcc
cgacctcaggtgatccacctgcctcggtctctcaaagtgctgggattacaggcgtgagcc
accgtgcccggcccttcacccctttttataactagatcattattccattgtatgtatgta
ctaacattttatttatctatctattgatggacacaagttgttaaataatgctgctataaa
cactgtatactagtttctgagaagaacaccatttattgtgatccttaaaagaaaggaaaa
cacatttttaagatagcaactcaacacccattcttctacaagttgcagcatgtgcaaaaa
tacaaacttaaaagatggcccaaaccaggagaggagaaaacctgaatggtttcttagcca
tatacaaaattagaaaactctaggagctgatattcacacctcaacacacttaaaggggag
cccatttgcccagataaaatcaatggggatgaaactgaccacacttctaccaagaagcag
aaaaatgttgtgaccagcttcagacatgattgaacaggggtatttccaatgattgatgaa
ttaacaccactgagaagtgagcttttctgatgatgtgcccagaggcaggcatagagtgtg
ggtgggaagaggaatttagaaccattgtctgtttttctaagacttttttgttgttgtttt
gggttgtttttttttttcactgcatagctgcagaaattgtgtgagcattttgggactgtc
aaactcccatctaactttgtgaagaattcttctgagtggattttattggtttcagctgga
gaatccaccccacaccccgccccccaccactagcagaaagccacatgcccaccaagcact
gcctctctcctcctgccctgaagtgatcagaaagcaagagttcaccacgggggaaaacac
gtggagtcaatttgtgcctcaagttagtccacagctttccacaatctacaagagatgagg
tggggatagcaacatcccaataggcacagcagcccagagcacttctcctttgcaaagggt
atttgtccctctttttctttgtggcaggcagtgggtttgatttttctaaatgttcagtag
aagattgttcagatttttctttctaaaactttctggagcttcagcagcactaacgtattc
tatatcaacatgcacaatggaaaaatattactggcaccaaataaataaataaggactatt
taaggaaaggggtggggtgggaggttgctgggaacatctgctcctgttcacaacattcaa
gccggcccacctcgaagcgccccccagccctgctagatcttgatgctctgatgttcacaa
agcagctcagctctcctccgagtcaccatgtcaacactggggatccaacccagtgttgaa
aagctatgtggggacctccttcaggcataggctgtgaacagagggagcaatcacttcagc
tctctttgctcagacaccaaatgtgagtctttgccaactccttggctttgaggacaagct
ttaaggaagacagttgctggataatatttcccttgttggagataaactctaaattcttcc
aggccatgaagaaggaaaaaatcctgacgataaatgaatctagccaaacaatcttcacgt
taggaacactgtgacaacttcctcgccattaaaatgcacttaaaagggggcatttctaca
gtgattccccagaaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctg
gagtagggagtaagagttcatgtagacctcaagatacatatgacttaaaatttcagtgta
cctctttgtattaagagtattttcactgaaatgccaaaaaaaggaagtccactggagtct
gtgactttttaattgtggtaaaaatacataacataaaatttaccatcttaaccattttta
agtaaacagtgcaatagtgataactatatgcacattgttgctcaacagattgctagaact
ttttcatcttgcaaaactaaaactctacacccactgataactttcctttcccaccccccc
ttcccagtcctggggaaccaccattctactttctgcttctcatggtttggagtccctgac
ttttaaaactggaaagaacttaaaagccatctaataaaccttccactctcagctaagtaa
cctgagctgtggaacatttaagtgactgattcaaggttggccagtgagtcatggagccag
gattcaggcctctgttgtccaaacccagctctgtcctctgtgtagcatcatatcagtaat
aatattatggttttagttgtctcctatcatccaaatcaatgctcatttatatgcaaagaa
atcattttgcagtaattaatattataaacatcaaattgcaattccagaaatattctgtaa
attcagtaagacagtcaaagaaaatttatgtctatcaCATAATCCTCCCCACTCTGC
Primer
(+)caccGGCCTGAAACGGATCATTTA
(+)GCAGAGTGGGGAGGATTATG


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