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Human element [ hs2295 ]


Position: chr16:1,479,665-1,481,005 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: C16orf91 - CCDC154

Timepoints:
e11.5
e12.5
e13.5
e14.5

Reproducible staining in gastrointestine. Tested at 2 timepoints (e11.5, e12.5) Published in: Noncoding deletions reveal a gene that is critical for intestinal function. Oz-Levi D, Olender T, Bar-Joseph I, Zhu Y, Marek-Yagel D, Barozzi I, Osterwalder M, Alkelai A, Ruzzo EK, Han Y, Vos ESM, Reznik-Wolf H, Hartman C, Shamir R, Weiss B, Shapiro R, Pode-Shakked B, Tatarskyy P, Milgrom R, Schvimer M, Barshack I, Imai DM, Coleman-Derr D, Dickel DE, Nord AS, Afzal V, van Bueren KL, Barnes RM, Black BL, Mayhew CN, Kuhar MF, Pitstick A, Tekman M, Stanescu HC, Wells JM, Kleta R, de Laat W, Goldstein DB, Pras E, Visel A, Lancet D, Anikster Y, Pennacchio LA. Nature. 2019 Jul;571(7763):107-111. doi: 10.1038/s41586-019-1312-2. Epub 2019 Jun 19. PMID: 31217582

Expression Pattern
midbrain (mesencephalon) (6 out of 18 embryos) 
other (9 out of 18 embryos) 

Embryo 1


Embryo 6


Embryo 7


Embryo 8


Embryo 9


Embryo 11


Fasta sequence
TAGCATCCAGAACCCTCCTGgcccctggaaggtgaaggcccaggagctgggggctcggga
cagggggtgctggggccaggccaggctgggggctgctgtcccgtcctcagagccagagtc
cctgggaaggacactgtggagtcctcccaacctgggccacttggggctgctctggggagt
acagtgccaagcgggggcacacctggcgaatgccaaggtcagggacagtcacatgcgggt
ggcgcctgtgcgacctgagccatgtccccacaatgcgtgtctaccttgagtctccgaatg
ggacctcatttggaaacgggcaccctgcaagtgtaactggtgaagctgagggcacactgg
gtgggcgttggccctaaattcagggacggggtccccctaggagggcagaggacacacaca
gggaagaccccgtgaggacagaggcagagactggggagacgcaaccacgaggcaaggagc
cactcctggaggccctggaccaggacctctggcctcctgacctgtgttccaggctgcctg
agttgtggtcattgtcacagcagtccaaggaagctaacatggcccccacagtggaccagc
tggggccacccaggaagagccagggagtcggtgggagcggcagaagcccttggggacgct
tctgggggaggctttcctgggagcagtaggtgaagggagggttcccagccccccatttcc
caccccaggggtggctgcagctgaggaaggaaggcccctgggaagaagcctggggaagaa
gggggttccgccattaaggatcaattgcaaacacctctgagctctgggcaggtgggcggc
agcagcccagcaggcgtcctggtaaccactgggccagtggagatggtcatggctgtccgg
gaggtcccgatggccgagggagctgggcaggtgctccaggagccccacctgcagcccaca
caccgggccctggctgggggtccctgggacctcgcttccttcccctcccccttccccagg
gtcctcctgcggccgggagtgctgttcaccccgctggctgcagaggcaggatgtcctcta
gagaggcctactccagaactcaaaatagcatgaaatttaattttccgcttatttgacaag
gctgggtccgggccccagtccacagcagagataagggtcccggggcccgggggcgagcca
gctgcgcctgcacaaacactccacggtccccaggcaggccgcgtgcaggtgaggcggggg
gcgtgctcccccctcggggccctggttgccgggcgctaaagcaaacgggctctatttgcc
cAGTCTGCGATGACAATGCTG
Primer
(+)TAGCATCCAGAACCCTCCTG
(+)CAGCATTGTCATCGCAGACT


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