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Human element [ hs2282 ]


Position: chr6:118,692,274-118,696,406 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: SLC35F1 - CEP85L

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGTCTACTCCGAGGACAGATTTTtttctgccattaatgaccactttttaaaacagatatc
tgatggcaatgtcatttgggggctctttgggtacctatttcccatcaagattaaatagat
ttacctgatcaagggctaagaggaaataaacctaatgcccacagacattttcaattacca
atgtttagttagggaatactctagcatctttttacagttaacttagtaaggcctttgaac
aacttcaaccattcttgggaataatcacctttctgttgagtgatggcaaaagtccaagca
ctagaagaatgatatattggactttggggcctcaaagggaagggtgagaggggggtgagg
gataaaagactacacattgggtacagtgtacactgctcaggtgacgagtccaccaaaata
tcagaaatcaccactgaagaacttatccaagtaaccaaacaccacctgttctccaaaaac
ctattggaaaaaaaaaaaacaaaacaaaagtccaagcaccgtgtccctcaatatctaaga
cacatgtcaacccagcacggacagccaagggaacaggcaccggtacttaagcatcttagc
cccactcagaccccttgagttcgattccatcctggcccttccagggctctatcaaccctt
aacaatcctaaaacacctaacccctgaagtcattctggaaaagaggaagagtttcccaag
ggccagagaagaagtcttagaaactagagaaggtaatgaccccctagaatcttcttgatg
caaaaacaagccaccaggatgaccaaagggcagtgcagtcttctcacagcatcctctgac
ttagacctgggctgctcagctttctcagagctgaagactccaggactttctgaatctaga
ttcacatttccaaaaggagtatatgtctaagacattccaaaaaagtggtcatgtttggtg
ggaatgaggttttcctgcacaattatggttaaatctcacgttagtgaagattttgtggtt
gaagccatctggaatcctctcactaagtggcttcccatagctctggccagaagtcacctt
ggttggacataaggacatgattatatatcctgttgttcagacctaagcctgagtactcaa
tcaggttattaaattgtttttaccctcaccctggatttttctgtaacaaggatcaccttg
aaaacaggctagactctgctatctaaaggtacctttacaaagagtctgaaaacagaataa
atattatgttttcttgatgaggcgtttattgtaccctctgagcatccaaacttaatgggt
cagaagaataccaggtgctgctcttgtttgataaaagcagttatcacatgctatttagag
agtgtgtggaaggagttcttggctgtgattgaatcctgcaattctgtctccaacaggctt
tcagcagccatggctctgagtcatctgcctggtgaccagaagctgacatccaatatcatg
tgcctccccagataatgaggtcaaatgtgccagacccacaaggggcttgataacagctta
ttaacatccccaaatgatagcacttttgattaaacctcacatgtctgcctgtcccccctc
tcatcctttctaaaattagagctggtattttactaaccatgcccttgcttgaactttaga
atggttcaaggatagtgcaaaatcatgatgtcttttcactgtaatccccaagaacagggt
ttttctgggtcacaaagtcttagattaattcaaactttactgagttttcctcccctttgg
aataaattagatactttttggaaagccaacaaggtacaaaacagagcacaaagtttagat
tcagaaatcatgtgctctaatgtgctttgttccctaagctaaatagtatgtaaaccaaca
gaagtcactttgcgtcaccgtaactcagtttgccatctacaaaaatgaaagagtgctact
ttttagagctttgtggagtaggaatcaaataggataatagatagaaatccctctttcaat
aatgaaagcagtatataactattattatatactggtatgtaatattattaccatcataat
tatggttcctgtttctaggttttatattttgtagcaacatttatctgtttgagaatttta
attgccaaagtcaatttgtcccattttgatttcaagacataatatattataagagaattt
gaaaatatcctctgatgtgcccctgggcctccaaaatgaagctgttctgggctggcaggc
agctctagagccccatgaaagtgagtagaagaaagttaagggccagactgatgaacagca
gaaggcaagcacaataaggactggggtgtggggggtcgatagcaatagggagagtctaca
atcacatggaagaaagggaaagtcaagatttccctgtcatggaatagtttgtttggcatc
gggggaagctgatcaaggtgaaattacaaagaaaaactaggagtggggagggctttccag
agaaaattaaaacagctcaggtggaagatggcttgcttttggacatggatttgactacag
agagggagagggtaagacaggtaggatagaaagtcaaggataaatctgcaccaagactca
ttgggtaagacatacaatgagtgcctgaaatccgaggcaggggctctgggctcacaatgt
cagcgtgaagatcatgatgaggctgcaaagcagatgagagtgaaggagtgagagggctgg
gaggagaggaaattcaggcagagagagagatgtgggaacttaagaacttagaggaaaaga
gttctgatggaggagatatgcacatgggtgtggaggatggaaatgggagagcggaggtgg
tgattcctgaagtggagacagtcaagagtccattagaccaggatcttcactgagtaccca
cattgcaaatggaatctcccaggctgaaggtgggacttataaagatgggaagattatgat
gcacacaagaaccaattttttccgtaaatttagaaaaatgaccaagagtttagaagatga
gagtgacaagaaagggaagggatgatatagcccgcattacagggagccatccataagggg
ataaggatattatttggaagccaactctcctctcgcttctgatttttttcttcctcatcc
catcctcagactcaggctcagagatggtgaagatgttgaagaatcagcaggctccacacg
atccttgaaaagactacaaaattaatgatgttttcttcagatagtcagatgcaggtacag
aacgaggaagtcaaaggaattgctctgtgatcaggaggagtgtgtagaggactctgaagg
accaacagaaagcctgggtgggaagacagccatggaaggattaaatgagaggcagaacat
gaaaattcagtgggcagaggggcttgcatttggggctatgactggctgacgaggatgaga
aacagggtggaatgaactgacctcaagattctaggtgagcccccggggtggtctgagacc
tcaggcctttccagaaacccaatggcatcaggattcttaacagaacattgaaggatgtgt
ccaggtgcagactggcccaggagccctcccacatataagctcaaaaatgaggtctttcat
atgttctgccggagattatgagtttggaggtgccatagtctctttcacccacttgcatag
gttgtagcttctggacactcacaaggcagctactttcagccagcaagtggcctgccacca
tcgtatctgaggtgtggtagcctgaggtcagctctcagttatcaaaggcctgatgaaaca
taattctgactgtgttttgacattgagttctcagattatctaatggcacagatcaactcc
cttcttgctcctttaccttaaccctattttattcaccccttattcccaaatttgtgacat
tattggtgaccttgaaaaactggtagcaacctaaatgccaaacaataggagaatagttaa
taaattatagcacatttgagattcagaataccaaaacgcagttttaaaaatggggcaaac
ttgtatgtgctattgtggaaggatcactaTGATGCTTGCTGGGTAGAAAaagG
Primer
(+)GGTCTACTCCGAGGACAGATTTT
(+)caccTTTCTACCCAGCAAGCATCA


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