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Human element [ hs2275 ]


Position: chr1:3,237,396-3,240,369 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR4251 - ARHGEF16

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
gggCTCCAGCCAAGTCCTCTGAgaggagcctggctagctcaggtcctggggaggatggtg
gttttgagggagggggctggcacgccctccctgcccacttgatccagcccccagccaggc
acatggctgtcccaagcacccgagggagacgaaacgcgtgcccttcctcatggagcctga
ctcgtgtcctctgcgagggatagagcctggacactgtggtttgccctcatcacttaccat
gggagctgcgtgggtgtgatttgtgcaagaccaggggactttcacaaaggaagaggaaca
gagggatcggagaagttgggagaggggaatctgaggtgtgtgtggaagctccctcagaga
taacttaaccccgggtgggctgatgggggagcatgtgtgcacacacgcgtgggggtaaat
atgcatgtgaatatttatgtgtatgtgagtgtggcagtacacatatgtgagtgtgtccat
ttgtgtgtgggtccgtgtgtgtgtgtacatttgtgtgtgggtctgtgtgtgactatgtgc
atttgtgtgtgggtctctgtgagtgtgtgcatttgtgagtgtatgcatttgtgtgtgggt
gcacatgtgtttgtgtttgtggggggcacatgtgtgaagggtacatatgtgtgtttgtgg
gcatgcatgagcctgtatatttgtgtgggggtgcatgtgtgtgtgtatgtacgtttgtgt
gtgagtgcaaatgtgtgtgagagtgtttggaggtcacgtttctggggggttgcacatgta
tgtgaggccacacatatgtgtatgtatgtgtgattgtgatgtgcccaatgtgtgggtgca
cgtgtgtgtgtgggtgcacgtgtgtgtgctttgtgtgggtgtacatgtgtatgtgtgacg
tacatgtgtgcggtgtgcacaatgtgtgtttgtgtatgtgtgcacgtgtgtgctgtgcaa
gtgtgcgtgcgtgtgtgtaggtgcacatgtgtacatgtgtgcatttgtgtgtgggtccgt
gtgtgagtgtgtgcatttgtgtgtgggtgcatatatgtgtttgtgtttgtaggagcacgt
gtgtaaagggcacacatatgcgtgtatgtttggcatgcatgtatgtacatgagactgtat
atttgtgtgggggtgcatgtgtgtgtgagtgcgtacgtttgtgtgtgagtgcagatgtgt
gtgagagtgtttggaggtcgtgtgtgtgtggggagtgcacgtgtgtgaggctgcacatat
gtgtgcggctctgtgtgattgtgatatgcacaatgtgtgggtgaacatgtttgtgtgtga
gtgcactgtgtgtgtgtgctgtgcacactgtgtgtgtgagagtgggtgtgcacgtgtgtg
tgtgagcatgtgcacgtgtgtgtgtgggtggcagtggttttctgtcaaagccgagtgtat
agcagtggcctgggagctcagagcgaggggaaacaggcccggaataaacgggctgttgat
tgactcgagttacatcattttcttcccctccggagcctataaatctcacgctccttgtaa
aaacagaatttaaaaacaattgagcctcctgggcccctcagttccagctccagctcctgg
gcctcgggaatgaaccagtgagtgcaccccggctggggctctcactctccctaagaccca
ggacccccacccacccccactctgaggccagtggcggagaggccaccactgtctcaggag
cttcgtccctgcacgtccggtctcctcccagacctgcggcacccagtgtggtgtaggcca
gtgcctggcagcctccagtccacaggccatgctggggtccttagagctgcttctccccca
gatggccaccctttaacgaggcgcagcgacccgtcacctagaaatccacatcctttgctc
cctgcccatcactgtgcctctgccaccagcacctcctcagtgctcaggacgcaccaccct
gttcgtgccccaggatggggacagggagggcagtggtgtcttcttttcagcaggggttca
tggccttcttacctttctaccttctggatgtggttcagtggactggggctccctgtgatc
cggcctcttctaatcacgctctggtcactctctaggccccagtgcccagcaggtcgatgt
gggtccctttggtcctgggcagccaccggctctctggcccgtgcttctgcgacacccgag
cacagagcagcccgtttcatgttgcctttgtgcctgtcgctagtgtactgtgtgcacttg
gtgcgggaagccatacgctattgtcaccttttcaaacggggtttcaaaagggtctcagga
cttagcccttgggaatggcaggatccaccccacccgtaccctcaggtctcaccggtacag
gtgggggcagccacgaggtggggcaggacacagcgttgccatcaccaagacgacggtgag
agtccgacctcctgggcttggaacagcttggacaaacaccagagcactcagcctgcacca
cgtggggcgggcggcatttgcagtctcacctccgcagtgtgtgccgccagaagcgatgag
cggaagctgttccaggcgccaacagaagctgcctggcccctgcctcaggaaagcgtcttc
ctcccacagcaggcgtggacggctctcctggaaagcccagggaggccggggagacagcgg
agggaggaggaagtccgtgaggatcaggggccccgccagctgccgccagtgcctgctggg
tcccaggccagggaacccccagctcccgcctggaaacccacgtgtgcagtcataaaaagc
accgacaaaggcgagggccggtgctgggagcggccgcacttccccgcaggcctggcttcc
tttaatcctgagcagtaaaagctgcaaggtctcacatcccagaacctcataacaaagagg
gcttttccccgagtATTTACAACTCCTGGCCGTG
Primer
(+)cacCTCCAGCCAAGTCCTCTGA
(+)CACGGCCAGGAGTTGTAAAT


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