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Human element [ hs2274 ]


Position: chr1:3,244,561-3,248,729 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR4251 - ARHGEF16

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGGAAAAGGAGCAGGAGTCTctggggaccggaatcccccacaggagggaagacctggggg
actcgggctggggcctccaggaagctggatgtgctaggcgttggggtcccagaggcgagg
cccctgccgggccaagtggggaactagccaggcctgcgagaagctccaagatgccccctg
tccccaggcaccacagccctgtccacacccccagctgttgtgactgagggacttgttccc
tggtcaggtttcttaatcttgaaactgctgacatttgtggtcagataattctgttgtggg
gagctgttctgtgcagtggggggtgctcacaacatctctgcctctgcccagtagacaaca
gtgacaaccagagctatctccttggtcgtgggccaggggctttgatgacagggccctgcc
tgtgtcagccttcctgggggaggtctagcagcatgcgcggagctttcgtcactcgcctgg
cagccggggctcttaggaaagcaggtgggaagcaggcggagaccctgtgggttcaaaggg
cacggggccctgtgctgccagccgaggggtcctgtctgggctgctgcagtggatgcggct
cccatcagagggtacagctgtctcccctagaacagaggcctgaacagatgctttcgggcc
aggagtctgttttatcagacccaggaaggagaccccccagggctccagagacttggctcg
ggcatcagtgcctggtgaggactctggcacatggagcagctcacgcagctcatacgcaga
atctgcagccaggtgggggcttgggtttgggccattgtccgaccctctgcgcctccattt
cctacgtaaaaggtgagacacagaagccaatgcccacgccctggaccccccgttcagatt
cagtgagaccgtgaagcccagcatccacaggggcctgccgggggagggcaccaatgctgg
cgggtagggaactccccagcccctcccaggccagaggagaacaggggcccagccagaccc
tttccccccaggcgaggaatgggcgccttctccctgggcccctcctaggaaacttgtggc
ccctggacccctcttccactcaccacctctgcccccaagggcctcccaaactgcccaggg
aaggcaccaaccacatcctgtcccagcagttgtaggtaggaagcagcactgaccagcagc
cttgggccaggcacagctgcccagcgggcatggtggtgttcgtggtggcgttccagatgg
tgctagggcaggaggcagaaatgcttggagttggggggctgggggcctttcctcccactt
cttcatctgaggggtcaagcatccgggtaggacccctccaacccaccaccccccacccct
tcccgactgtgtctcgctatccagttttgcaggaatggaattaatgggatccccggacag
agccaggagggagaggcccaagctgtctcccaggctgtagtgtcgggggccgaggggttt
gcagcaacacttagtaacttaacaggaggaccgtggggcacactctctagaggcgtcctg
acctcatcatcatcacaggaaaaccaggcagaggaaggggctatgggctcacaaggagct
ggccccacaggtgccagagccctccagcccagggcgagccttcacacccctctcttccag
ctgcctggcccaatgagttgagtgtgattctggctgtgggaagaaaaacattcacaggag
agtgggcaggggcaccccaggccgtgcggcttctggagagaggggcacgcctgggagagg
cccccactgccacccactggttatggtgggctgtgttctccggcctcccatgcagtccct
gccttacccacaggtgcccatggctgagcttgtgttgggctgagccgagtcccgccagct
gggaagaagtgcacccaggaggtgggtcaggggaaaggacagttgtctctggaaggaggc
ttggagatcactgtccctttaagaatgcaggtcctctgccagggctctgattgcgatcac
aagtgatgatggcagagtctgcccagagaacagcagcagagccctccgccaagaggggtt
aaggatgcctttgagacttctggtcacccacttcaccttgggcttgtcaaatcaaatggt
ggagtttaactctcgcctggccagagccgagcagcaaagctagaggcggggaatgaggct
gggtgggcctcagacccaaacacttctgagagctcagcagggaggccctggctggcagac
agagcaggaggccccggactcttcagaaactgaaattggaaattggagatgctttttgtg
tctaagtcttcatcctttaattgtcacttggcaaggcgtccgctcaaggccttctctggt
ggccttgtaagaatgcagggacaaaataatgccaatgacagtggccctgaacagagagca
gaggcctcacatggcgcccattctcttctgctcttcttcccatctgcccctcgctcccta
ggcatccccaccacatcccctctcagctcagcgggggctgcctggctgctgcctcagcag
gggccacttttctaatcctggggtctcagacacacccttgtgcctccacctcaaatccca
aggcaatatctgccccacagcctcaggacccacttgccagtccaatggcagaacaaacag
cccagagaggttgttggggagggtgggtttttgagaagctcttgcagtcatcacgacaga
gcctcctaagcgagggcgagtcagaccccagaaaccttggatctctggccgagtggaggt
gcccctggttcatacaggcccgagctgccctcagggccctcctccctctgcctccagcca
gagactttctcacctgctgctctggggcagaaatcggagccacctggagtgtgcctgcca
gggtcagggggtgaggagataagggcctggctttcagctcacaggaagtgggcctgaatg
cggagaatagcagcaattccatctgataaggccccgctaaaccccacattgacaggcccc
accgcccacccgggctccaggggccaagggaggggccgccagcccactcagccctgcaag
ctgctcctgcccttcggcctgggagggggccttcctctgccctggcctccatacctccag
cacttgggtgggctttgatcacctgtggattgcaggggggaagctgcgcaacttctccac
tgccccttccccctgccagcctggggggggcgcatactgggagtctggagaaaggcagcc
cccccccggcacacttggaggtggggggcattcctagcaacccccttcatccccgagtcc
attgatgaatggaccctctctgcagagaacacagcccaccagggaatcccccagatcagg
accccaggtacagaggggttcaaagcacgtttgttgaatgaatgaatgaatgaatgaaca
gatgagcgaatagcccaggctccacttccaggctgagtaactactacaaagggacacaca
tgggacgggggctgccaggagggacttctctgagcctcgttcttcaaggagccagatccc
ggaaaggaaacacattcgtccaaatcctctaatttgctgcccagaggaatcctggtgccc
agggccgctgacagccccttctgtgggaatgggcagagaacagccttcctccccgttgcc
tggcacccggacccagggctcctgggctgcgtcctgggctcaccgtggctctgctgtggg
ttaagcaaccccttgttagtaggctccccgctcgggtggaatggctgtgagctgtggccc
ggccccgtctgtggccagatctgcacacagccccggggggcctcagggactccgggctca
tgacacagacatctccacctctcaggatgagggagggtcacctctctgcccaggcagtgg
ctctatcatgcccctaaaacatagactctggccctgggactgggtgtgcattcctgaaca
ggggacgggcttggaggtcccaccctgccaggctccctgctccgaagcacccgtgggtcc
cccacctctgtctggccaagcccccgaccctcctgccatggccttcagccccattttcag
gctccGCATCTCCCACTTTCCTGACaaTG
Primer
(+)GGGAAAAGGAGCAGGAGTCT
(+)caccGTCAGGAAAGTGGGAGATGC


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