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Human element [ hs2273 ]


Position: chr11:61,628,739-61,631,797 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: FADS2(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGTATGAACCCAGGAGGTGgagcttgcagtgagccaagatcacaccactgcactctagc
ctgggcgacagagcgagactccctctcaaaaaaaaaaaaaaaaaacagaaattagctact
cgggaggctgaggtagaagtatggcttgagcctgggacagagtcatgatcacaccattgc
actccagcctgggcaataaagcaagatcccatctccaaaaaaaaataatccgtaacccca
tcctcattttgtttccatatatgtgtagatacactgcacactattgcaccacacacacag
aatagaaggaatgtgatggaaagtgggagcagaactggctacatctgcctccctcctcac
cttgaaggccaccttattggaacgtgaggtcctgccctcggccaatgttggccccaaggc
catctccagcctctcctgagcgctcccttcctcctttcctgttcagctgctggcacccga
cccctgatcacctaggaccagcctagattccccacagccaagcaggcacaaatgcagcca
ccgttgcctctgacagttctggaatctgtcacctccttgtcagtgccgtgggttctggtt
taggcctctgtcatttcatgtctgagccgctggaataacttcctagtctccccctctcca
gtgggtggggatctattttaagacacaaatgtgaccttgttcttcagtcgtttgaagtga
gacagggcagtcccttggcctcaccttccacctcggacacctgtgctgagcctgtggcat
gtcaccatacctaaactcatggcaggatgagcgccctggcagtgggaacaggccatgcag
aggccccggggagggagtaagctaggtcagggggctgagtaaagacaggttcttaacccc
atgaggctccgtgggtgactgggtgggatgggggctttagcaggggagagttgggacctg
cttggagcgaaggccactctggttgccatggccacgaggacaagcaggagactgtgggaa
gctgatgctgtggtccagttgagacaagacttgggtggcagagagacagtggacagggtg
gagccgtgaagtcaccctcccagtacatgagagaagacgtccaagcccagtccctgacac
cagtccagccagaggcagggaggagagcagagtggagggacacaggatgacagtggggcg
tggggaggccagcctctgctgtgagagctctgagatagggacgatggtacctctgacctt
ccctacccctccaagccctctgtcctgctggaaggagatgccaggaggagacccaggtgc
tgaggaggagggacaggactgggggacggttggggacctggccccgggttgggggcgcac
cttcagaatcgcccttgccccacgagagggctgctgacccccacccctaccccatggctg
cccctcagcaggagggtccgtttctctcccgaaaaacagggcacagtcacttcctgatgc
taaaacactcagcatttccctagaaacaaaggcagccatgcaaaccccgagcaagcaggt
ggcgtgtagttgcccattgcatttcagtgggctgcggtccagcttctagaggcctgagtg
tgaggtgtgtgcacatctggggcacgcacttggtgccagggcagaggagagggcaggttg
cacctaacttcatctttccccgcaggacctggcctgggccgtcagctactacatccggtt
cttcatcacctacatccctttctacggcatcctgggagccctccttttcctcaacttcat
caggtgcctgggctttgctgattcatccctgggccctccactggcactgatgatggcttt
ggcatgagaagaggctcggacggctccactttgcctggggacctcccatcctggcccctt
ggcaggggctgtcctgggctggttgggagagtggatctgttcccactgtggctgggcccc
cggaggcccctgcgctgagctgtgttctcttgcaggttcctggagagccactggtttgtg
tgggtcacacagatgaatcacatcgtcatggagattgaccaggaggcctaccgtgactgg
ttcagtagccaggtagggaagtcagggccggtcaccagagcctggtcccaatgtccatgt
cctggccccagatgatctgcacctgctaacacagggctgtgctgggcctcccggggctgc
ctgtgtccttttgctgggagcttcagggctgagcaagaaagggcagcaggaatcccccag
agggacaggtggggcatctgggtgggctgaggccatcaggcaggacggtatgatgtggac
gggtggcctggagaccctgggtaaggctgggccccctgggaatgaggccgggcccttggg
ccttcctttgttccctgacactcatcccctccactgacagctgacagccacctgcaacgt
ggagcagtccttcttcaacgactggttcagtggacaccttaacttccagattgagcacca
gtgagcgcggggctgcggggaggcggggagacccacagcgggagggaagtggccgctatc
ccactgggcagaatgcagaatgtgggggccacctctttgtctctctgacaaggtctctgc
ccaatatagagcaaggctcccagccagccccgctgaggtcaggagaggggctcccctatt
ccatctccctgagggtcatcctgtgcccctcatgctgtgccacttggtcatagtggttac
cacctccctccatgtgggcctgggactttgtagttatggagcctgcacacgcacctcatg
accctgtgaggctagcagggcagggctacgtagcttgcctggaacatcggccgagggact
gccctgctgccccttgtccttgcttcacctcttgtcactgtttttttttttttttattaa
aaaataaaaaatgtagagacagagtctcaccctgtttcctgggctggagtgcagtggtgc
tttcttggctcactgcagcctcgaacgcctgagctAAAGTCATCCTCCCACCTCAGcct
Primer
(+)TGGTATGAACCCAGGAGGTG
(+)caccTGAGGTGGGAGGATGACTTT


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