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Human element [ hs2272 ]


Position: chr1:11,847,301-11,852,413 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MTHFR(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTGGAATGTCTTCAGCCACAtgggggaatgggtggaagaggccgggatgtgtcctgccag
ctagagcagcgaagaaatcccagcggggccccaggaagtccaagcccatggggttcaggt
gctcctctctggctattccttcagacccgcagctgctggacacaggccacagagctggtg
cctcccgcgccatcactgcagtgcagcctgggtggacggaggaagccaaggggaacggcc
tgggctcagagtaaggagaccttgccccgggggacaaacggtgtctgaagtgcaggggtg
aagcggtctccagtcctcaggggcctggaaatcagctccttgggacacggtcttatgtgt
attgaccattctccccatccattccctcttcggaatgtttcagctgttctgagaaaacac
tttgcattcctgccccgcccctgtgatttctctttgggcggcaggcagccgggagaggct
ggaggcctggggagatgggggcagggcacaaggctaagctcagcaccttcctccaccctc
ctcactgtactcaactcctaggcgggcactaagagcagctgccttcctggacccacctta
acctcttgtgactcaactcccctttccagggtgcagggaacattccctctgccctgcctt
ccagctctggccacagtggcctggacagagtagctgggtcccaggcctgcccctgtggac
gagggaccagggaccaagagcgcactccagccctgagcccagagcctgcaaagcccaaag
caaggcccataaacggaggctacggtaagaggagctgtgtgtgcagtttggtgggtccga
gggatgggggcaagggctgaggggcttgcctgagccatggctacagctgggccctctctg
gccagtgctcgttcctgcaggatcctggaaaagcaggcccaggcccatggctctgccctc
cttctggccctgaagggtcacgatgctcttggccatcaggaggaagtacctgcagcgccg
gtgcctcgaggcactgcttcacgggctgcggggttcccagcaggccaggtgcctggcagt
ggcatggcagcactgggtggatgcccaaggggcagagcagctggtgcggaccctggtgag
tgggtgcacccctctccacactgaccatctcccatttcacctcatacttaacccaaaccc
ctctcaaaagtatggcccttggacctactgactccaaaaccttgggggacaggcccagga
atctgcattcttaatactcctcagatgacacccccttgccatagccctttcactctggtg
cagcagtgtcgggggagaaaggcagaagggctggggactgcgggggagcgtgagcacaag
aggccttctctgccaactgtccccaaagctcagggagtggcacctgagatgggcctggca
gacgtggtggcagcggatcctgcgactgcgagtggctcagcagttacagcagcaggaaga
tgggtgggtcctttcccaggtactgccctcttccctgcattccactcagccagccttcca
gaagtctgtgccacagccacgcaccgtggagctttccctgcttgccagccccggggcccc
ttcgttttcaggggagggggtcagttccattacagaacacacaggctggatgctggagcc
cttgctttgatttgtggccccagctcaggccaggcccacccggtccatcagtttgcgaag
aaggtgtggcatgaggcatggctgccactcacactagcccatggagggcctgggtcctga
gcgccccctccctcatttgctctgctctgagtacagcttcccagctcaccatcagatcta
ttctgagcttgtgcatttggcctaggcaagactggctggctgcttggggcagagggaggg
gccctggggacaaaaggagctgggtacaggggttgctctagcaggcacagcacagacccc
ggagaaagcccacaacaatagcatttcctctcctccctggttccaggcctttaagaagtg
gcaccaacgcctggcagccaggagcccaaggagaggagctgccagtagcccaagaccctg
gagcaagccaggccccaagggccccgagagtggacaggaagccgccagagcaccgcgggg
ttgggggcttggggcagagcatggggcccagctgcagctgtgacttgttctcatagaata
aaaaacagaactgaacttagccttcccagggaaggaaccatgccccacacatccagggag
tgatgacagaggggacagcttgaagagctctgaaggacaataaaacccactcctcagtcc
tagctgctgctttcagtctctcctagcggctgcccctctgccccagccagtgaggccagg
aagggagtaaagaggacatcccacaattgcgtccacccccttggccatcaggctgctctt
ccactacacgaaacagcccatctgcacctgccagtcactgcccccaggccctggggcttg
caggtgactcgtggggagccaggccaggcagataacctctgggacaggacgaggggatga
ggaaggcagctggcaggacaagggcctacctgaaaaatacaccaggaagctgggctgctg
cacaggcccaggcagatctggggcccctgtgctggcaaatctcatcttagcctctgacag
ggaacggggcagcatcaggcctccacagccaggcaaaaggggaaggccacgagccccacc
aagcacaagggttcagactgccttcaacccttaaggggcactttttctctcaaggctcag
aatagacaactgtgccaaaaagcagcatggtaggtgtcagcccaatgcccatccaggggg
ctggtgccatggacggctaagtgggcaggcagggcagtggtgtgccccttcagtcacaag
taggtggggcccagctgcccacctctaggaggtggaagggtacagcactttgccacatct
cttctacgatgccaccagtgcctgatgcccttgcgtgttttgcctgtactgcacgggctc
caagtgtaagttcactgggagtcccaggctggctctggaggctgccttggttcgagggct
tagttggcaacaaccactctcctcgccttctcaggaggtgccacccactgtggtcctctg
caggacgcaagtgctccccaccaaaagagcacagactcctggctagagcagagagtacta
ggttcccatgtggggccgactcaggtccaggaagagcctggaagcctcactccagtctag
ctgccattgtcaggtgggggagtggaggccggggtgggagagacacgaaggagagtggag
ttcccaagagaagcagcactgtggaggaggaaggcgggacaggagtggctccaacgcagg
gcgtcaggacgcagggtcatggagcctccgtttctctcgcattctgggtgggcctgttga
gaagctccaatgtgtcttccaccacctgccagaggcagttgtccagtgggaagtcattgt
ccaccaggttgaccaggaagtagttgtcgtggatgtactggatgatggtgcgggacgggg
actcctcctcatacagctttccccaccgctcaatccacagggcaaaggcctcgtcctaca
cacacatacccccgcacacacgcacacatgcacacacacacagaggcaagattaacaggg
ctctccaagggctctgctcaacaggacatttcccggaatagaacaaggcccactgccagt
atcacttcccacccctgcccagaaataaacaccctgcatcagcagtgacatgggtgagtc
agagctgggtgtgccctgaaggctgggtccagtgtggccttcagcacacgcttgggactt
ggtcccaatccctccccacggttttccaggtgggcggggcaagcttgcccccggctcctt
taccttccagaacatgaagctgacgggatccactacggtgggctggatgatctctcgccc
agggaagatgccccaagtgacagcattcggctgcagttcaggggcattggtgatgttttc
accctgaggggatgtggggtgggggtaagacctgggccaagaacaactggagtcccactg
cctggacagccttgactcaatgaggctgtctgggctcaataccctctgcctgcgcctcca
ctcccggcctccactctccctgcgcctccactcccctctccctgtgcctccgctcctggc
ctcctctgcctgcatctgtgaatgatatctctccccacacaagcctgaacctagaggcgt
cctggccacttcccctctcctccttgagcaccccctgctcactctctgatccattccctc
ttgtctagcccacctccaggagtgtgtttggcttgggtcactccaggggtctcttcactg
gcctccccggctctagccgtccccaatctctctcatccgtatgactatccactgtgattt
gcctaaaataaagcaggaaccaagccaccccactgctggagaaaggcttcccttgcattg
agggaaaactcaaattccagcaggacaaccatgatctctgcgggcctggcccctgcttaa
cactcccgcctcctcctgctcatgttccccgtttccccagatggtgcagctcactgcctc
tgcctgtcctctgccctgtcccaggaatacccttctctcctgttggccaactcctctttg
tcctcagtgattcccacagatgaccctctgagaagccttccctggcctcccaggtgagat
atccctcctctggacccgacagcatcctctcctgaacttgattttcccacttacactggc
tggtggtcacacattgatctgcctccctcactctaggctgggagctccttaagagcaggg
ccccagttctgcctgtatctctctgtcttgcacaatgcctagcccaggctaggtgctggg
tgtttgctcaacgaagggcctggtactctgtgggaaccctggggcctggcctaccttcac
attgacaaggtggtaattaacccggagctcgtacttcttcagcacttgcagaAGTGCTTC
CGCTGTCTCGcgG
Primer
(+)TTGGAATGTCTTCAGCCACA
(+)cacCGAGACAGCGGAAGCACT


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