Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs2261 ]


Position: chr7:19,150,461-19,154,049 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: HDAC9 - TWIST1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTCTCCAAGCATTTGCCTTCcttgtatttacaggcgtgtccccatttgcaagttgtacgt
ctgttcctttcacgtgacatttcataaaagccctaacatctgggcaagataaacttcctt
caggtacctgcttaacttttcacttgtcacactcacatcaccccccaaggcatccctttc
tctctcccgcctgcctcagtggtggcctctgtgggggtgcactttgttccagtcctccca
cctcccacccccatgtcgctggccccagttccagcttcccacaatatcaccccctcccag
tgccaacctttgccgtggccaggttctttgagagactcccgatccttagtctcccacttc
aggcctgactgtgcaggtaaatgagggtagcattttgaaccccagaaaaaaagtcatatt
tcgattctgtcttcagaccaaaaccaaaccaaaaggaaaactgccgactactccatacaa
actcacacttaggttcgatagtcccttatacatctatatattcctcaataaagtgaaata
aaagagcagctgattttggtggtagtcatttcgtgagatttccctctctggtagatacgc
aaacttcatgttttacagaaacttaatttcacttgctggaaatctcccctcccccaagaa
ggctgccttctggaatgaatgcttttagagttgttttttcttttcctaatctagaatttt
gttcctctgacttcagcctaaatcgcacgaaggaggaggacacatccacaaacttgagag
cgggtgagagaaaaaaaaaatagaaggaaaagaaaagagtccacgtaaacaagaaaggag
gctgttgcaggctctccctgcagcaaaccccaaacgatctcgttgcagggcgcccacaaa
atcccggctataattgagtgttttctttgaggttttctgaccatgtgctttttaccatgg
ttactatgactctgattccagaagctgaatattcatcatgatcccatcccaacctttcag
aaggcttatctcgttggtccttacaaagaaggagaatctaaagggggctcctctgtgcca
gtgattttaacctgctccaccttccagtgacctgccacatgctccttcttactttataga
catctgggaattccatacatgccttaaactccaattacacaccttcttcaaaggacacgt
gctttgatttgctaagaacattaagtgggctcacgtccttaggccttgagacaaaagcga
ggggaaaatggaaaatgtatcccatgtcgttttttttttttttttaatttaaactgggtc
tatcctttgctgtccagtaaataaagatagttaataatcctcctatttgcacattcgtgg
gctctcaaagagttggaaggtttctgagaaatagtgggattgccggctttgagaaaatat
gaagaaaccgatttctccttccactttgccagtgcactttccttccactttcactggtgc
tgggggcggcgcactctttacgacatataagcggaaaattctgcaaaagtggcccccggg
gatccccgcccgacccctgtctgtcgctaatgtgggcctgtctccggaaattcgaggttg
ggcctttgcctgaatctgttgctattgctccccttgctaccgctgacacttggcaccgcc
gcctcctagcagcggccagacgcggggctgggggccttccacgcaaaccgaaggagatac
ggacatcgtcattctccccaccgcgcgagccgggcccgccacccacgcaggggagaccgt
gcccgtgcccctctcccgcgcctgccgcaggtgagaccctcgctccccacggagttctgt
ttgggtttccgtggcgtttgttccccgcaggtttgtttatttttcttcaaattacagatg
cagggaaaaccgcctgacatcatgagagcgggacaaacgctcactttgaaggattcctgg
gcaggacttcaagtgaaatcatatgcctgagaagaacttgataccggtctagagaaaata
accagttctgactttgccaaaccatggaatgtgcaaaatgctctacttttttgcaagagg
ccaaatgtcccttaaaaagctccattatgaatatgaaccttaagaccgaagggtcaagaa
gcttgtgccgttgttgagtgtgggaaaaaatttacacacatcgtgcaagtttctgctcct
taacattattttattaataatacgttccactttggggaggggaacctgtaactgtgcgtg
aattatcatctggacatgtgcttctgtgaacaaaaggggaaatgtgcatatgggtaaaaa
aattactgctttcttataactaaaggctatcaatctgaccaacttataaataaaagtaat
caatagcacagtaaaggaaacattaaattttctacaatttacccaagacaatttaataca
atactttcccctagcaaatgcattctgaaggaaaaagatcccaagtgaaccaacacatta
attggaaagccttagcttcttatttccgaaaacaagaggtaattcattctatgtgttctt
taaataagggtaggtagcaaaaataaaatgaaataacataaaatcaaaagaagatataat
ggtggaggaaaagaaacaggtggcttcatttctattctaaaaaagaatttcacgatttat
gtcttgtgtatacaggggtagggattagaatctgcaagctggaaactgcattccagtagt
taatatttttcattgtgcagtcgcctcattcaaaataaaattaccacctttttcattcat
ttatttctctgaaaatctggggggaaacattaccttcagattagtatttaatattactat
aaatatggcatttgcttttctccaaagtgtttccccttatgaaaaaagtagaaaaagcaa
aacacattaaaaaaagaaagaaataaaagaaaggcaaatggagagctacctttctttgac
acatctagttcttatatccagagttaagataacaattaccttctcagcagtcatggccag
ctccatcctggtgtaccttaagaaatctgaaatatcaaatagtcagaccaagctagtgaa
caaggagactccccatgaataatttagaaaatggaggtggttggatgatacatacaaaaa
agaattaccaacctaatgctttccctcatcctcctagggcaccctccttacatttctaac
ctgccttacacacaacacacacacacccccaacaaatacaccaacacataatcgccttcc
ctttctgttatttgctaaaggactatcaaaataaaaaaataataatacttctccaagctt
tcactaaccttttaatacaagtcaatgctgcagactccttattgtaaaatatagtctgaa
atattaacaataaattcataatattcttatgtcagcattctatggtgctgtgtgaagaag
aaaacaaaaaccttcaggcaataaaataactttgacctgagctaagcaaaaacgatctgt
ttggatacatacacttattagtcattgttTGAAACAGGCACCAAAATGA
Primer
(+)CTCTCCAAGCATTTGCCTTC
(+)TCATTTTGGTGCCTGTTTCA


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.