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Human element [ hs2249 ]


Position: chr7:99,594,233-99,596,427 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AZGP1P1 - ZKSCAN1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGCACTTAGAGAAAATGCTCAttagagcatttcagacttaggattttgggattagggct
gctcaaccagtaaagcaaatattccaaagtcaaaaaaaaattctgaaatctgaaacattt
ccggtcccaagcatttcagataagggatatttaaactgtagccatcccgacgagtgtgag
gcgtcttctcaaaagtcttgcacactattttgtctgctttgatctgtcatgtgtttccta
ccactttgaaagcataacgaattttatccgtattcatttatgatgagaggcagtccaggc
agtgcaaagggcacaaatcgtggtcccacaagtcctggcttctgacccggatcactgtga
gaccctgagcaagcaagaacttgctccaggcctcagtttccttggtctctgggggaagcc
aggatgataatcagccatgctccaacccctcagctgaaactcaggcctggatgcattgta
aatggatttcctcttccacaggtgagccgctgaattcgattccttcttccttccttcctt
ccttctttccttccttcctttcttccttcctctcttccttccttccctctctccctcctc
cctccctctgtccttcctccctctctccttccctctcttctttccttttttttccttttt
gagatggggtctcactgtgtttcccaggctggagtgcaatggtgcaagcaaagctcactg
cagcctctgactccagggctcaagtgatccttccacttaagcctcccgaatagctggggc
tacaggtgtgccccaccacacccggctcattttattaattcttggtagagaccaggtctc
tctctgttgcccaggccagtctcgaactcctggcctcaagcgatcctcccacctcggcct
cccaaaggactgggattacaggtacgagtcactgcgcccaggcttttctcccttttgact
cattttgaggcccccgtcgtagggtacacgccctgggaatcgggggtcttccagtatagg
gaaccaccgagatgcgggccctccgaagtcctagagagggcgcctcggccgccggcaccc
gccacacttccggcctttgtgggccgcagcgacggcggtctgcggctgtcggttctgttt
gttgctgtcactgctgtttgttcttgccagcggctaggtgtgtagttgcttggggctcct
agcacgaggcctctgtccccaggcacgcagcgccagtctccggctgttgcgccctgggcg
ccgcctctctccggcccccctttgtttcctgagccagctgggaagactaaaagggtgggt
cctgggagcggcccatggttcgacccttcttttcaggcatccttggagcatgcaggctgc
agatttcaggccgaccccgctagcaccaaagtccatgctgctgtccgtggcagctcagtt
tgaaaatggcctggtagaaagtccaggttgttgaactggtaaacgcactctgcatccctt
gacttgaagttttcattattctctaacgtgcacttacccccagtagagagcaaatgaaga
ttcatacaagaaatactgcctttcccaaaatgggacattccagcaagggtgccggtactg
acttgggttagcttaagagagagatgcagttgaaaagcttgtcggcagggatcagggaag
acttccactaagtggtgtgtattcaaaggagaggtaggaattggttaggtggacgacatg
ctccaccatccaagaagaacattccagatggaactcaggcaaaagcacaaagttcgaaaa
gtcagaagtgcaggggaagtggtaaatatttcgacaccatccagataaatggttgttttt
ggttttttgggatgggggacagggtcttgctctgttgcccaggctggagtgcagtggcac
gatctcggctcactgcaacctccgtctcccgggttcaagcgattctcctgcctcagcctc
cccagtagctagaattacaggcgcctgccaccaagcccagctaatttttgtatttttaat
agagacagggtttcgctatgttggccaggctggtctcgaactcctgacctcagtgatcct
cccacttcggcctcccaaattgctgggattacaggcgtgagccaccttccccggccccat
cctgataaatgttTATTCTCTGTCGGGGAGTGGTG
Primer
(+)TGGCACTTAGAGAAAATGCTCA
(+)caCCACTCCCCGACAGAGAATA


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