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Human element [ hs2241 ]


Position: chr17:71,536,599-71,539,247 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: SDK2(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGCTTCAGCAGGGTCTCTCAtcaccgctgtgattctcctaacagaatatgggactaggta
tgatatttgctattaaacccataacataatatatatataatatacccattttataactga
ggataatgtttatttatttattgctcccacttaagcaaaacacttcgtgcgtgaccctgg
tgctatgtcacttgctttcaccaaaaggtccttgggcctcttcccatttgataaatgagg
aaactgaggctagctaggaggggtaactgggaggacaaccatcaattggtaggagagtct
cacatttgggcacccatgccagtgacctgtcttctgcctctcccctcgtgggctgtggtt
aatctacccctaagtcaggccctacccggaaggcaggtgagcacttgacaggagataagt
gggtggtccagagtcttccctggggcaggagctggggctaagcctgcagaacctctgccc
tagccagagatagaggtgctgagttgtggctacaccgtacaccccagcctcccctacagc
actttcctggcaaatgtggtctcggccatcaagctgccaatggtaagctgctaggccccc
tgagagtaggtgtctgccagtgtctgcccagcccctaacatggggcacccctcccgctac
tcctggccaaagtggtatgagcaccctcagagcagctgtgaggacagctctggctgggga
gaggcagctgggccccagagggctggggcagcagtgaagggaggtgcccggggggctgca
ggggatgggctgcagtgtgtggaaagagctgcctgccaggagctctccacccttctaaaa
ggtggaccagggccagagccaggctctccctgctggtggagcggatgtggggcatggcta
atccccaagctgcagatgacatcagaaggaccaaggctagctcgggcagcacacttagca
catgggcgccttgctgggtgctccatcccatcccctctcaacatcctcacctctatctta
gcagggcaataccgcaccacccccatttcacagacaaggaccccgagataggtagagggg
tgagtgcccgtggtctacttcatggcgacttcaaggccagagctcgccccaccctccctc
cgtctctccctgctggctcttcatttctcgtggcgtgtttaccttcctgattttgcctgc
ttttgtttggtttgatatgaaaatgagtttgcccagaatgcacagcggcagaaggaaggg
ggcgcggggcggagtcacgctgagtgacaggaatgtgcagacgttgaattaaaagcagct
tggcacaaacagaatccggctacggaaaattcaaaatgtatttagagccgagtggaagat
cctcgtcaatcgggctcatggtttggtggaaaccacctaggctgggatgcaagtccaggc
ctgttcttgcctgtgtgccctgaggagagccccaaacctctctgagcctgcctcttctgc
tgataaacagtgtcaatggcatctcttttacaggagtgtcgcgacaaggattaaataaaa
cagcatctgtgaagtgcgtgttgccaactgccaagtgtcatacaatggtgaggttgtatt
tttggattgtctgcttccagggatgtctaaagtacctgggactggcccatctcatcacag
tgcaggcagtgcgctggccccaagtccctctctgggggctgtgcctctctgtctgaccct
ccacgcttcccatccctggtgccttctgaggtgggttcccagggaccagcatggctggga
gaacaaaactgaggttgtgacttgcctgacagcagcaggggcagcttctggtggggatgg
ctgctcctgtgatggagggggtgctacaagagagagcaggggtcctcccatctgtacgtg
cctggagcgaccctggcttggcctcctgggtgcctgttggtggagggggctggtgaaaca
gctcagcaggaatgagggaaacctgccacaagcgaactccagccagggcctggtggtgag
cagcacagggctctcaatgagcagccgggcctggtaagcagcacagtggccctccgtgag
ctgtgccctgctgggcaggctgggcctccgtcccctcaacgaggaggggtggaggcaggg
caggattatgaggcagcaaggggagagggaggacccaggggaagggccagccacggagag
gcagtagtggaggggtcttgggattcggggcctctagcagggccaggctgggaaccgagg
acacttggtctccctccctgggcctgcaacaggcctgaaattcatgccatttggtggccc
tctttaagaacacaaaatatcaaatataaaattaggtgccaaagtccggaaagggcagga
gattcccggaaatgactgcagtcccacaagcacccagaagtgaggacattcataagacac
cctcccctaggccctggagagcgagactcggatctggggagattggtgtgagtcctggga
tgggggccacacaagttctaggccacgccccctctgcagcataggcaggtcccctccagg
gcgcagtttcctcatctgcaaaagaggggatgggagaggggaatcTGAAGGTCTTTCCCA
GCTGTcaTt
Primer
(+)AGCTTCAGCAGGGTCTCTCA
(+)caccACAGCTGGGAAAGACCTTCA


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