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Human element [ hs2237 ]


Position: chr10:10,335,147-10,338,188 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LINC00709 - SFTA1P

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCATGAGTGCTGACATACTGGgacattttaattcctaaaacttccagctggaaattcagc
aaaaactgttctcttggcacttcccaagaaacgttgcagtttcagagcagaaggtgaatc
agaataaagattgggggatgcaccaccaccaccactaaaatgacagtaacaaaaaaagct
attgagatgttttggtatcaaaggttcagcttttatttcatagtgttttattttttaagt
tgcagcaggagagctgtctcagttcctgagactacagatggataaaaacagattttggga
aaggtggaaattttcttacttcctggttagaaaaaacagcaccagagggaacaatttcca
ttatcctaaaacctttcattccctgcccatgtgtccctggacggccctcaccagtgaatt
tgcattgccccttggtgtgtaaacaggcctccccaaacacatttcctcctcccccacaaa
gcgtcctgctggagacaggacgttggcttcctttacagctcacgaaagctctcctcccag
cctccctgaccgctggctgttctccatgctctgacaattacagcccatagctggattttc
taagaagaatccaggttttcaatgctctgttctccttgttgaaaactgcgtttgtacatg
gtatagcacaagccctgatggtgactttgtatgctagaatcccaattccagtgtttatga
gacctagctccttgcctcttttggatgctcgagaaaccttcaagtagcattgtactctgt
aagtttgcctttgcagtattgtcctgtctgtgcatttggaagcagatttgagcctgacct
ctgtgtgcgtgtgttgtctgtgtgtgtgtgagtgcatgcctgtgtgtgtgtctgtgtgag
tgtatgtgtgtgtgtctatatgtaagtaggtgcatgtctgtgtgtctgggagtaggtgca
tatgtgtgtgtgtgtgtatatcatgaaagggtgcaagtctgtgtgtgtgtgtgtgagtgg
gtgtctgtgtgtaagtgtgtgtatgtgtttatgtgtggtgaataggtgcgtgtctgtgtg
cgtgtgtgtgtctatggtgaatgggtgcatgtctgtgtgtgtatatatatgagtgagtgg
gtgggtgagtgtgtgtgtgtgtgtgtctgtgtgaatagacgagtgtctgtgtgtgtgtga
gacagtgcatgtctgtgtctatgtataagtgagtgacagcatgtctgtgtgtgtgtctgt
gtgagtgcatgtctgtgtgtgtgtctgtgtatgtgtctgtgtgtgtgtctgtgtgtgtgt
gtgtatgtagcagggagtagaggagcttggactgggggtgaaacatgatagaatataata
catggaggtgtcacgggggttttctataagattatctggtgaagtgaaatgtcacagagc
tcccaaaacaaatatacttctccaaccaaacacatcaattgctcagtgaagtcctatttt
ctgtctagggaagggggaacatttcccagcggggtaaatcgtaatggatcacatgacgag
atagcacagtggtttccttaggaggaaatgctctggaaaattaacacttttcggtgatac
acagaacaccaccccccatcctttgccctagaagggagaaggctctctgcaggcaataca
ggctatgcggaatctctccagtaaccattcctctaatgtggcaacgccgctgctaccctg
ggctccgagagtgcagggctaattgtacggtgtcagatggtaggtgtgtccgtggtacgg
ttttaagaggcacatcagtgcagctttatacaacataataggcgctgattaggcagccgc
gtggcgtggcatcagcatgtgtgtcgcagactgttagctgcccgcgctggggcccacttg
agctgcagaaacacacaatggtgcctggggagatggcggctgcagctccaaatcttttca
taggggattagctctggctctggggaagggtggggcgggagcaattgcagaattcccctg
caaggcctggcagacgaccgagggtgacattctggtcagctctgactccgacctgagtga
gacccttttgtctgctgcactccctacagcgggcgattctgcacctgcgtggggtccggc
aagcccgggaggccagtctcctgttcccaggcagcctgtatatatagactgcacacagtg
tgtgatgatcgtggaaagcaggactgtggagctttgctgttactgctgacaatatttcct
gcctccccgtcgtgttctaacccccctgtctcgcgtggtaccagtgcccagctgcggacc
aaggctggctttcctcctcgtgtttcctttacgcgatgtcaccaatcccccgtgcttgtt
ctgtaaacggttggggtttggttttgtttttgtgttcctgagtcacaccttgctttccat
ttccagacttacacccctaagccggccccccacaccctcatgccaggattccaggcccag
aacctacagctgccagaacaaaatgccttcaacagcaagtgtcaattctgctgtgacctg
cacttcaggctgtccagcaatgacccgctcccctccaccaccccgactcatctctcagta
attccccaaacagagcttctagtgctgatagaaggggctgtctttctctcttgtaactat
agtttgcttgctttccattttgcacctttgccctcgtttccgtattctatccttggaata
ttctttattttaccttctgtaaaagctacgagatgcactatctactcaagatctgtctct
gttaaaatcatctttcctgacagtcatattgtttagattacgggctggaaccgtgtaggc
tctcagtgcctaagtggctaaaaagaaaagccctggccccaggtaaatccaggttagaat
cctgggtctgcaggagacggaggttacagtgagccgagatcacgccaccgcactccagcc
tgggcaacagagctaGACTCCATCTCACCAAAAGAAAAaaaa
Primer
(+)GCATGAGTGCTGACATACTGG
(+)caccTTTTCTTTTGGTGAGATGGAGTC


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