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Human element [ hs2234 ]


Position: chr6:3,246,856-3,249,920 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: TUBB2B - PSMG4

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
gAtCTGGTCAACTGGGAGCATTTtgctgaatttagttctgctttttcctgtacccccgat
gccttccttaccttggcatcgctgtcctgattcctgtaccagcttcctaacctgctccat
cctgtgctctcccgcctttgtgctcagtcttgcccccatcttctaatcaccttgcagttc
ccagagctgcttgtgtctcttacctgttcatctgggcccggcgtggtggctcacgcctgt
aatcccagcactttgggaggccaaggctggtggctggcttgagctcaggagttggggatc
agcctgggaacacagtgagactttgtctctacaaaaaataaacaaaattagccaggtgtg
gtggcatgtacttgtagtcgcagccacttgggaggctgaggtgggaggattacttgagcc
caggaggtcaaggctgtagtgagctatgatcacaccactgcactctagcctggacaacag
agtgagaccctgtctcaatttggaaaaaaaaaaggtgcactgaccacgggtgtccagcat
tccagaagcccacttggtgttctcctcatctcctaccccaacaagcagctactgccttgc
cctccagcagtaggtgttagctctgcaggcttcaggagttgatagaaatggaatccgaca
gtatgtactccgtgtacattctttttgtgagactcacccgtgttctcgcacattccataa
gcatcccatgcattcctagctcctttagatgctgtgaactggggacggttgactgtgtcg
tatttatgtgtgtgtctgcctcccggttccagcggagggcgaggcgggggtcatcgttct
gaagggcatctttgtgtcttcccagcactcaggacagtgcctggcacacagatgcttcag
taaatgtttgccgagtgaacccgatgaatgggcattttgtcactgggtcttttcatttat
tccttggcttgctccctgtctccccttgaaacacagctgctttcattgaccgcgtcttta
tttgttgggtggatgtgcttgttttcagtgccaggaaggaaaaacaagcacagaagtcgc
ccctcccgggcagccatattcccggctaagaagccctcctttgtgccaagagcagaaccg
tctatggctgggtggagggtcacagcctgtgggacggtgcggagaggcaggggggtgcgg
cgagctctgggcttgcaggcaggcggtgactcatgcagagtccggccaccggtgcgggaa
aagggctttgacgttctcagcaaaaccccaaggcgagctccgagcagcccacctgcccct
cccacccacgcagggccttgcagatgaatctgcttctgtatcacatgatccgtttcagca
ggagagagacggagagaaacagccttttgttctgccagcctccatgattgcgtatcttag
gcacaacgctctgaagtcaggctgaggattctaataaaacttgggaagctttacccggaa
gacaaggtgctctttcactaggcatgatttggacccaggatataaattctctttcgtggg
acgggagagttgtgtctttgcttatcctcggggagtctcactgtgccccactgatcatgc
gtgccttccaaagctgtcaggtagcccctccacaatcacacatatgtgcaaccacatatt
ttccaacccaaacgagggtacacaccatctggggagggattcccccttcccatatgcgtg
aattcgtttagctaaaaagcattaacagtcacaaaataaaatcacattgagacccacatt
ttaatggaaacactggacctttggggttgtgctggagattttgagatctgggataagaaa
cccagagtgagcaggtggaacagttcccactggctttggtgacatggccccaggactgct
gtctacctggagggcctgtttggagctgatttcggagaggtggtggctacactcctcgcc
actgtgtgcacggtgcctgaccttgcctggaagcctgcgtgttcacttaaattcaggtcc
tctgttcagcaccccatagctcctcacggatcctcaccctccatccctgcctgggatccc
cactcttccacctggaaaggggtgcagggaggtggtccaggatccaagcctcagctccac
cctcagcgactaagtgccttgtgggctcttcatttattcagcgttcagttccttttttga
aaagtgagtcatggctgggtgcggtggctcacgcctgcaatcctagcactttgggaggct
gaggcgggtgcatcacctgaggtcagcagttcgagaccagcctggccaacatggcaaaac
cccgtctctacaaaaagtacaaaattagccaggcatggctgtaatcccagctactaggga
ggctgaggcagaagaattgcttgaacccaggaagcagaggttgcagtgagccgacatcaa
gcattgcaatccagcctgggcaacaaaagctaaactccatctcaaaaaaaaaaaaaaaga
aaagaaagaaagaaaaaaagaaaagtgagtcattatacctgctgcctcgggatttgtatt
ttatttttactttatttaattaatttatttagagacagggtctcactctgttgcccaggc
tggagtgcagtggcgggatcatagctcactgcagcctctgactcctgggctaaatcgatc
ctcccacctgagcctcctgaggagctgggactacaggtggatgccaccatgtttggcttt
gctgggatttctgtgaggctcttcaaatatatgacctgactcttaccccactaggctact
ctaccccccgtcccatgctgccctacagcactgctcacccatttcccctgcccagcacac
cctcttctcttcctctagcctaactcaccctgacatctcaggcccagctacctgaccagc
ctggctcagccccttcttactcctgaactgtgtggtgtttcatgctctgtcttctattgt
tggttttcattctgtgtttgctggtcttgtctctgcaacaagctgTCTGTGCCTGGAGAT
CCAAT
Primer
(+)cacCTGGTCAACTGGGAGCATTT
(+)ATTGGATCTCCAGGCACAGA


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