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Human element [ hs2232 ]


Position: chr3:156,845,778-156,849,158 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LINC00881 - CCNL1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGCCAGGAATAATGGTGACGgagaggaaagaggctctgtgtaatcttggggaaagtacac
aatctgccagtacttcagtttcttcatctgtgaaattatagccttagctgtccctaaagt
cccttccaaatctaagccctttgctccttttatcttttggcaaaataagcatttgaagaa
atctggctatctcaagaaccccagctgatcttctaatgcacactgccaggcctccaccac
ccccgggccaagagggagtctctgacagctgaattgtggaaacctctgggtgaggcaagc
agccctttgctttctccaaggaacaaagaggcacgaggaaggcactggtgggaggcttgg
ggtgagaggcctctccaccagggcaatgagttatcctgtccctttctactgactcaccac
tgaaggccttgggcaattgtgccagccagaatcacagaagtggctgcgaactcagagata
acagagtggtccagggaagccccagtggactgagtcatggccaggctctcacagccctct
tctcgagtcagcatcgactccctgtgatctccctggagcctcagactctcagaagagcag
gtctcagaacactggagatgaaaggaacctgagacaccatgtcataagccctgcccacca
acctccctatcatgtgacttctcgggctggttgtgttttttttttccccagctactctga
taaatcacattgtttggatggctgagctctgtctctggtctgactttaaaattaaggttc
actttgcccctcaacgccatgggtccagctctcaggactcctccaggctacctttacctt
ccatttttgaggtagtgtcatctaccagcaagagctctgagccataaatcaggaaaccag
ggcttcctgcttctgtcctctgaccagacagaaatggagcattcaccaagtcacatcatc
tctttgggactcatcagggtttgactgtgttttccccagagtcccttctagtaccaacag
gagaggatcagatcatcctaaaagccctcttcaattctgaagtcagtcatcctctatcag
agttcctgaacacagccaggctggttctgccggggatagccgtggcttgtgactgccatg
cctctcctcctcccaggaaggtacagaatccacagcctcaggaatgccaggcattctgcc
aagggcgcccttccttttctcggtctggtttctcagtctctctcttcccaatctagacta
gactgtcacctccactcaccaatcccgtggaggggtcaggggtgggacggaggagagcca
gaaacgatgaactgcgactctactcctcatctgtgtggcaggcctgtcattcctcctcca
gtcgggcctgcctaactagaccagcactggggtcactctgcgtgtgagtggggagggatt
cctgcctatccagtgaccctgcttagtgggtggatgccacctctgtccctggagcacccg
aagcacccaggggcccccacctacctgtttcacttctccagggcttccgtgtaaggccac
ctcccccacctcaggcctggcccctctttgctaaggactgcttatccccaggatgttttt
ggcaccttctgggccacaaaggtgcttcctgtaaaagaacaaaccgccccaggttgcctt
ttgacacatctatttcagggtcagttggcatcttatgtttcgcctaaaaaactgaacaat
cttttttctctcatccagtaagaaaagtcttttttttattttcacatgggtttatgcacc
ccctgccccccaccttttcagaaggaggctcaatgcaagtatctgtgttataaactagct
tcctacactggccctgcccctgcgcggacttagccttcctaagaaggggctccttttctc
ctggcatgtgctcggctgctggagagaaaggcctattgttcttcatgtgcccagtacact
cagccaggcaacacgctgggtgttcctcccaggaggtagaaaaccgcctccccaagatcg
gatcattttataccttgtgttttgtttggttttgtttctggcctttccttctttgctgta
cctccttcccgagcgctcagagcccatagagcacttatttctttccgttccctttgcaca
gtgaattgccttttgtatgcctttgatgtgattgctcagcttccaagggaggggaacgag
tgtctcgtctctcccacctagaggctcgtgctgcctgtggtcaggaagagagcgaacaaa
ggcgtgcttggccccgagggaggctggggtagggcccacgcgtggaatgtagggtctctt
ctgcccagaggtggaaagtcgagcagtgctttggggtctgcggggctctccagcgatgat
ttggggtgctcatggcagggctgagctgggcaacaatatgaggagaggttttgcttcttg
gtccctgtcccatctgcttagagtatccgggttgtctggggctccgagggaggagcacta
cagcaggagccaggaattcgcctgcctctgccaccgtgtgaccccgcatgacactgaccc
tcccagggggagcctccctttcctggcccttgagtggggcaataactcctgccccacccg
ctggctttctgggtctcatgtggtgaggagcaaacacgacactctctgaggaaacgcggt
gagaagcaagagccctttgtgagtcagaggtggtggctgttgctgtctttcccactgttt
accaggcgccccccacccaatttcccgtgagcatctagtgaccccatgctacccccttgt
ggccaaaatgcgactcatcattcattgctgtgaaattaccttgctattaaaatcgtaagg
aaaaataaataatgaaagtaattaataataatgaatatatagtaattaacccagactgga
atacctttacttttcatcaataaatccataaaatataatttttaatactttttgatggag
gaaatggcgcatgaagaaaaaagtgcttaatgtgggcccagacccaaggtgagcgtggga
ctgagggcgcccttcccggctactacccagctgctggcggcgccagggaggcctgcccga
ggccagacggtggccacttgccgaggctcccctaaaaggtcctatatgtccccaagatga
tggggccaggatgaggaacaggtgagaaagcacttggccgctcttcctcagctctttaaa
atcttttcaggtccctcaagattacaaaacactttaatagctatctttttctttactgag
atagaaccggttgtctggaggcaaattagagctcctgcatgttgaaaaataagtgaCCAA
TAACTGCGTGTTTCCTCGtTa
Primer
(+)AGCCAGGAATAATGGTGACG
(+)caccGAGGAAACACGCAGTTATTGG


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