Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs2227 ]


Position: chr11:2,610,931-2,614,716 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: KCNQ1(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAACTTCTGCTGTTCCCAGAagtgcagctggctgagcacagacacagcaggtgacctgtg
gtgatgccagggcatcagcgcttggcctccccacactgctccagggcagacctggcctcc
tggctgcatcaggaggcacacgtgatgcatccgtcatctcgggaccagttttgagacaaa
catcctatagggcaggaccgtgaactgggtagctctacagagtgtgaggggctggagacc
tcctgcccactggccacggatgccacggatgcccttgagagttaggagaggtggaaggga
ccccacttctccctgggagctccaacttctcttgcatgtgacttcagtgcccacttctgg
ggactgtgatcccaaactgccaaattctctagcagctctcttaaaaccaaatgtgaagga
ttctggctttttctgtcctctgagcccagcgtggggtatttgagatagctgtgctgccac
caggacaggggcgtgcaccttgtcttcccaggagaaaacacagcaaagcctgtttgctcc
ctagtacctcgtgcaaaggtgccatctgtggccctgctcgctgcttcctctgaggcagac
atagtagtgactgtgttctgatacaaagatggcacttgcccgatgctgcactgcagcacc
aatgcagaggccctggcaaatgttcgcagaagcccccgtcccagggcgtggtcccccttg
gaggaaaagggcacctgttttgaaaacacttggttatcatggtgccagaaagcactagtt
taggccccacatgaaacagtggccttgccctcccagcatgggagagccctcatcttccag
gtggtggggggagcacagcatttgaagcccactcccctttgaccacttgctgttgtccag
acagacatcacgcacgtgggccttgcattggttcctgcttactttgtctctgctgacccg
gtttctgctccttgaagtctcagcccccttcttccatgattccaaggcatgtccctctaa
ggaggcttgaccccaccctggagggcctgctccccactctctgccttccatgccccatgg
gagggctccatgtggcccagtcccttggaggctggaccccactgttccggactctgggct
gttggaagccaggccctgcctcagttgtgccaagtggccagggttctatgcctggcagag
gaggtgtgggaggccaagcgctgatgccctggcatcaccacaggtcacctgctgtgtatg
tgctcagccatccaagtaatatgatccattcccttctcagcagccgtccctttacccttt
ggtcatttctgcatccatctctccctctcggacctcttcccagtgcctgggactaacccg
aatgtctcagcttaccagcagttgtaaggatgctgtcacatcttatgcatggcagagagg
ggacaaacccacagtgttcgcaaccctttgtgctcgcaggcaccagcccagcccgccaag
ctccagttcattcaggatggctcacctgcatccccacctccttggcaggaggctgggtgg
tgttccctgccccttggggctttcctgggcatcccatgtggaagtcagcaggcaagacca
agtccaggctcccgctccactgggcaccaggctccccaggacttagatgccatcaggatt
gggctgggacccgaccacatctcagtgagcccccgggacgtgctcccgcctgcccgctgg
agccggcacaaagggcgattgtgccaaccaatgcccagtgcccccacagctccggattca
gggctgagaccattgtctccatgcaaatgggggctttctgcgcatgctaacgggcaggtg
ggcgtggccgggggctggggacccagcctgtgtgcggcctggagaagcatcgcttgctgc
ttgctgaatgcggggcagcccgaatcgatgccgtccattcagcctggttagtgttatgaa
gtcattagtgctgtctgcggaatgttaatgaggggcaagtgcggagaaagtcaggcgcct
tttgtggaatgctcctccacggagaagatttctctttcctgctggagtttgttctttcct
aacttgataagtcagcccaggctggaaccaccagctttctggagcctgagctgttggcct
ggcccccagggacagagcgacccctgataatccggagtcccctttgcccaggaggctctt
ggagagccctggcttggggagaaggagatgctgatcccagggcagatgccactcctgggg
aagccccacagccccactcccgcaaggcgggtacgaacagccacactgagtcccccgcaa
agtcaaacccaggcctcgaccttgtctggctgtgctttctgttgtgtgaacctgcaggtt
aggcagaagtccccttgaccctgcctcagggctgctacctgtctgcgccatccacctgca
cacaagccccttcagctcgtgctctagctggtgctgtgcggtgttggccccatttataga
tggagaaacggaaggccagggccatgtggggaactcctgaggacacctgtgtgtcctgac
acctcactgagcctgtcgagaggcacaggcaggtatggcagtggcagacctcaggggagg
gaggctgggaaggtagaaggtcccccatggtagcatcagaacacagactaacctgcagca
aaaatgggctgtgtggtccctgtagagcagcctcactgaggggaggcaccagccctcatc
ccacgcagcagggcccgctgctgctccctcaaccttctgacctgggtggggagggagggg
aatgtcagcagccacccagcccgagagccagagcacagcaggggctggccagcctagccc
tagagtctttgcagtgaagcgtcacagactcctcatgaaggatgcatggggacccaaccg
catgccacttggcttggcagtgtcaaagggactggggacctgcgaggatgcggtggccat
tgtctgtgcccagcctggggagcctgacactcacagcccggctgctgctgccttgggcgt
cctgaagatcctctgtatgcttgtggggtgggggcagacacacaggcagcctcctgccca
gagggtccaagcgggcatggccatccacatctgcaggtcagaagaggcctgggctggagc
cgcatactggccatgctgcctcgctgtccctgcctcagagccactgtattcactctgcct
ggaactgtctttcctggatcccaggagtcctgaaggagccgcctccatcctgagctgcct
accctgcccctcctccactccagttgtctccacagccaggtcaccattgaccaggttgtc
cagtcccctcctcataggggagtggccctttgtctttcaccactgacccttcccaagctg
gtaccatgcctaacccatggtgggtacacgataaaaatgcagggctgtgccaccagggtt
ttgtcttgacaaagggactggaggcaggttgtcagagtagggctggccggaggtggcctc
ctgaatgcccctaggaggccagaggagacttccccaaattcactggtcctggaggccgcc
tcagaggccttttgctgctcagagaacactgggctggaaggtcgtggtctgtgacgtagg
atcggggaggccacctcagaggccttttgctgctcagagaacactgggctgtaaggtcgt
ggtctgtgacgtaggatcgggcagcacgcacctttccacctggcCTGGAGGTGATTCTGA
AGGGct
Primer
(+)CAACTTCTGCTGTTCCCAGA
(+)caCCCTTCAGAATCACCTCCAG


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.