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Human element [ hs2218 ]


Position: chr17:38,224,836-38,229,126 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: THRA(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGGAAGCAAGATGGGTGTTActggtgcccaggaaatactatccttgcttcgctgttttgg
gggtgggcattaaaggttgataccaaagcctcagccatgcccctcagcagtggccaagag
cagaatgattggaccaagcccctggcccacctcctcctcctcctcttttcctcttctaaa
gaagagatcggctcttggctcccagagccccagctgcctgtttctttttctcttttacca
ggcatgggggtggggaaacaggggaaccgaggctttggtgtctttcggcatttttgtaca
catcagtgagtgggtgtgttgtgcacgcatccatgtgagagtgtttttgtgcatgtgtgg
gctggggagggctctgaatatctcctggaacggtacccagagccctgtggctctgcgcat
gcggggtgagtgtgtgtgtctgcacgtgtccgtgtgtgtgccggagactcagctgcattc
acgcgcgcgctctctccctccctctctccctccctctctctctccctccctcccttcctc
ttccctctccctctctctctccccctccccctctctgtctctccctccttctctccctcc
ctctctctctctcacacacacactctcaatctttctctcttccctcccccttcctccctc
cttcctattccctccctcctccctttctgtccctgtctctctgtctctgtctctgtctct
ctctctctgcctctgccagttctgcttggttaggggctagctccagcctctggggtgcct
gggagaacatccctccctttctttccccctccaccattccctcccctcctaggccatgct
cttcagggcttgcaggcaacttcttctactgccttagatgagggagtgaggagggaggac
cccaagccttgtgcccatggtgccatctgcagcaagtgccttggccccgtgacattcatg
cctccagcattcagctgccccagctcccagctccaattacccgctggctgctgggggagg
gtggggagaatgtgccgtgcccagcttgggggtgctcctgcttctgctttcttggctact
tggatctcctgcctccattcctgaggggaattgggcagggggggcgtgaagttctgtggg
ctgataaggaggggctgagttctccagcatgggtgtgggcatgaccacccaccagtggtc
atgggggatggatgtgacctgggaggagacctccagacctgggcacccaccttgatgcct
ggctggagctggcccgggcaggaggagggagaggagagcagcaggtgggtgaggctatgg
gggagccgagtgggaagcagtctttgatgttaatactgggcatctggcccaagtcaaggc
tgctgtttatgtctttctgtctctgacctgcagggggggtttcctgttatattcttttgg
ggcggggtggggaggatcctttgtttaagtaaccaatctcccccttatgaggatccccac
cccatctcccattctctagcctctaaggtcccacagtggctaggtgatgagtcactgccc
cccagctccagaacctgtctcctgggggcccagtgagagctcaccaaggggtgccgcctc
ccctcctcccgtctcccccatgcctgccaggctggggccctgagtctgtgtgtactcctc
tgccacatcacacctgccaaatagtaccttccttcccgccttcactcctcctctccttcc
tggcactaggataacagagagttgggtggggcagccctgctcaatccatacctgagaata
gaacagggggtatgggaaaggacagggagtcccggtcctagagaggcctctgcccctcag
catgggggcacatgtcgctgctgcagcactgccaccaccacagactcccaggggcccttg
gtgtgggtggctgcctgtggtgcccgtgttggcatggggggcagtgctgcccatagacgc
ctgtgcccatgcatgcccatttatgtgtctgggccacggtggccgccccggcccctcagc
atcgcccttcctggctcccatggtgggaggctgggtgatcaggagtgggtggtgggggag
ggatctccccccaccctagcagcaggcagaggggaaggggagagggaggtgtgaacctac
ccacagaactattaatagcccacatgccaggccaccaagaaccagctgtcaccgtggaaa
ccattcctacgcccccctccccccagcctgcatggggtgggacttagacagggtacgaag
ccccccacccatctttctttgttacctttctctctttgtctcccctccttcatgtgtctc
tcctccctttatctgtcctcctttctacctcaccccttctccccatcccccatctctggc
tcccctttcttcctctccctctactgccttgtcacccctagctctaccccagccctgtcc
catttctttgttcttccccctcctcccttcttccctctttcccccaccagcctttttacc
cctcctcccatctttccacccttttctcagccgccccgcatgtacgtgtccctgtggctg
gcaaggagggctgggctttcttcagagcactaaggacaaagttcaggggccccagaaagg
tggggccaaagcccagagcagatacgcaggagggttaatgcgggtagtattgggggttag
atcctggggacagaaactcccctctggcagccccaggagtcctttgggggtgtcctcaga
tatacaggactgcagagtgggacggctcggcagtgggaacctggcggggcgcccgtggat
gccgcattggccccgtgtccctgtccccccatggcagaagtacttaagcttaatgaaatg
cttccccctccacgggcactttgcctacactgcctcccagcagctcttatctcacaagga
gggagtgggtggccaggccagccgacaggtgggtcttgctgtcctgctgtccagcctggg
cacagaaccccatagctccgccccctcggcctccttggggcagggcctccctcgcctctg
cagaggaggtaccaggaaggagtttggggagttaagctggactctggaggaggggtgaga
ggctgcccttcagggtgggtacccctgccccatgccccttacccgctgacctttttctgt
ccgtggctaacacaggctcatgtggtatgtgtctccccacatgctgggccctctgcctcg
cctctgtatcaccccaaaggcccaagtgtgtccctggagagatgccaaggagtccccagg
ggttccagcctctttctgggtacccagtgagggtgccctaggcagcaagggcagcacctt
gctcctctgcccactaccaggggctgactgtagctgggctgcactgcccagcaccagggc
accattcagttcaaaagaggggtggggcagagagcgagtctgcccctccccccagtgggc
acgtgcaggcccttggcagtacccagacacatttggagttaaggctgggcaggagagagg
gatggggaaataaacatggtggcttaggttggcactgctccaggtctgcaatgtagcaac
tggtaagtggcaggggcctgggggaggggaccctcaggagccctggcctggggcaggagc
tgcccatgccatgtggctgccactggtgttccccgcctggcccggcccacagcagccagt
gctcattcctgcacacactggtcctcctcggctgcccccaggacctgctccccggggctg
cccctctctcagcatgcccactcctgtgcttgcctcctcccctccctgggggcgcttggg
cctccggctggcgagtggatttttccagcttctgtaaacaagtggtggcagtgtgccagg
cgggcaggagacaggcgggggcagcaccacagccagggtgtgccaagcaccgaggcacag
cctggggggcagacggagacacccagacccggagagagagacattcagacacagacagac
agacagacatgcaggcagcctcgctggacgtggagtcagaagatcgtcctctattgtcca
gcccaacccccgtagcggccctcgccccctgcccctcactgtctggctgagagcattagg
ccccagtgcccagcccctgggcttccccacccactccttctcctccccaacctccacccc
ttagggctggctacgccattataaatttataacaggaatttctccacaagccaagaaaaa
cttgacctACTTTCTTGATGGCTCCCTGGgc
Primer
(+)GGGAAGCAAGATGGGTGTTA
(+)cacCAGGGAGCCATCAAGAAAGT


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