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Mouse element [ mm2217 ]


Position: chr13:15,026,434-15,031,664 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCTGGTTAGGTTTTTGTCATCCcttggttggtggccctgcattctataaaaaagtcaggc
tgagcatgacaggggacctcacctcctgcctctaggattcgtccctgttagagttcctgt
ccagatctacttcaataatgaacagcaatatggaagtctaagccaaataaactcttttct
gtcttgctttttttgtcattggagtttcaccacagtaatagaaaccctaacaaaaacaga
ctctaagattcttctctcccccagaccttggtcctgacatcatggaagcttttgtgcaga
cctgcttcagtatttacagcaaaagctaagcagtctgtgacttttgggataacattccac
tttgcattctaggcactaggttttatgagccattttattaattaattttctgttggcatg
ataaagtgacataaccataacaacaaagacagcttatttagaattacagttacaggggtg
gggatggcatggcaacatatagccagaaaaatgaaactgagtgatcacattttggcagca
catcagtagaaacagaaaagagtgaactagaagtggaatgagactataaattctcaaggc
ccacatggcatacttccttcagcaaggccacctaagagttccatacatccccaaacagct
ccatcaactagggaccaagtgttcaaatacataaacctatgaggaacttttcttctttaa
aacacaccactgttgataatgttttagatggaagtaacatcagaaagatcactgagatag
ggaaatatttggggcatttgaaggcctgtatttgaaaatgataagtacatgctagtgtgg
cagactaaagagtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaattaaaact
gatgtctagggcaagtatcttagttaggtttctacttctatgataaaattacattaccag
atgtgattgtttgtatatctttggaccagggagtggcaccatctgaaggtgtggccttgt
tggaataggtgtgacctggttggaatgggtgtgtcactgtgggtgtgggtataagatcct
caccctagttgtctggaagtcagtcttccactagcagcctttggatgaagacatagaact
ctcagctcctcctgcaccatgcctgcctggatactgccatgctcccaccttgatgataat
ggtctgaacctctgaacctgtaagccagccccaattaaatgttgtttttttaataagact
tgccttggtcatggtgtctgttcacagcagtaaaaccctaactaagacaccagaagtcac
ttgggaagaaaggtgtgtatttcttcttacaactgtcaggtcacactccatcactgagaa
aagtcaggacagaaactcaaggcagacccctgaattcagaaactaaggcagagctctgga
tgaatgctgctgacagcagcatgctgctgctcccatgacttgcttggaatattttctgat
agactcaggaccatgtttcctgagttggtacatcccatagtggattggaccctctgacat
aatcattaatctagaagatgcctagaggacgttagaggcaatccaatggagtgtttcttt
ctcaattagattgccttttcctagatatgcttaagtttgtatcaagttgacaaaagccaa
ccaggacaattaaccccctttcatcctgatataccaatacgtcactgttaactgtaaccc
cgcctttgttttctttatcctctatgtttcatattagtgctgatatttcaattaaaaaaa
aacactccgactttttaaagtcctggagtcttcaaattttcaaactctaaaacttcaatc
tctaaaatatctaaaactctttcaaagttcaaaatttccaagggtttttaatggtggatg
catagttttaaaaagagtaatactttcttattccaaaatggaagaatcaggcattgatac
attcaaatcaaaacaaaaccagaatacattcatttctgtcgctgtgtttcatctgggatt
cacttataatctaggctccacagtgactcttcagctctgcccttaggttcttccctctct
ggcactcatagcttatcttctaaggccagacttgcttcccttcaatgctgctgctgtcct
tgatgcttgtcccatgacactagcatttccaaaatactgaggtctccactgttcactcaa
caataactcctcctaggctttcttcagagattctgattcttccacatggtggcaagcttc
agtttttctccctgaccattttaatcctgggacttccattttgactgcggttgcagtgtc
atcaatggcctttcctggtctcttacactggtcttcctgaccgcttcatgtcttcaaaac
tagtatagggtactcgtacacagtatcaagcttggctgccagcacaaggaactgctttgt
catccatttggaccccagattttgtgctgtggtcctaagaaatgcttccagaaattttct
tttttttttccttttattttattttaattaggtattttcttcatttacatttccatagct
accccaaaagtcccccataccatccccccattctcctacccacccactctcacttcttgg
ccctggcgttcccctgtactgaggcatataaactttgtaagaccaaggggcctctctttc
cactgatggccgactaggccatcttctgatacatatgcagctagagacatgagctccagg
gggtactggttagttcatattgttgttccacctatagggttgcagttccctttagctcct
tgggtactttctctagctgctccattgggggccctgcgaacatccacttctgtgtttgtt
aggccccggcatagcctcacaagagagagctatatctgggtcctttcagcaaaatcttgc
tagtgtgtgcaatggtgtcagcgtttggaggctgtccttttgacgatgctggtctttgtt
tttgaattacagccttaggtgatcaatattaatccttccaaaaatttcactttagcagtt
ttaattcaaaatatcacacaaatggcactggtctttgctttttatttaattcgatatttt
ctttatttacatttcaaatctttgcttccttcttaaagtcacaatccaggcctctatcac
ctgaactgctctcagcattatcttctaagttcccacaatagcacattaaactatgaaaac
ccaatgtttgtctagcctaaagttccaaagcttttctacagtcctccccaaaacatggtg
tggtctgcttcaacaataaaccatgaaccaattattggtatccattattttttagggggg
aagaatggctccactcactgtcacccctagtgatacattaggaaactttttccttcctgt
tgttgtaatttatgctatctaggcttaaaagtattggttccagaaggaggaatgtttctt
tcaggaagcacaacaaacatcccactgaattggaagttaagaatctaaaactcacctgct
ctgtgaggttatctatggcttctgaactgatcaaaatcctgcgtgaaactcctttaaact
acacacacatacacacaagcacacacacacagggtgggagtatgtatatgtacatgtata
tgtatatgtgtgtgtatatatatatatatatatatatatatatatatatatatatatcat
gtaataaggacacatgctccactatgttcatagcagtaatacaatagccagatgctggaa
actactcaacagaggaatggatacagaaaatgtggtacatttacacagaggaatactact
cagctattaaaaacgacttcatgaaatacttatgcaaatggatggaacttgagaatatca
tcctgagtgaggtgactcagtggcaaaggaacaaatatggtatgtactcactgataagtg
gatattagccccaaagttcagaatacccaagattcaattcatagaccatatgaaacctaa
gaagaaggaagaccaaaatgtggatgcttcagtgctttttagaagggcgaacaaaatact
cacagggggaagtatggagacaaagtgtgaagtagagactgaaggaaaggccatccagag
actgccccacctggggatccatcaaacagccaccaaacctggacattactgtggatgtca
ggaagtgcttgctgatggaagcctgatatggctgtctcttgagtggctctgccagagcct
gacaaatacagaggaggaagctcgaagtcaaccattggactgagattgggagtcctggat
ggagaaattggagaagggactgaaggagctgagggggtttgcagccctatggagggagca
atagggtcaacagaacagacccccaggagctcctagggactggaccaccaaccaaagaat
acatatggaccaacccatggagctggccacatatgtggcagaggatggccttgttgagca
tcagtgggaggagaggcccttgggcctgagtgtgttcgatgccccagtgtagggtaattc
cagggcaggaggatgggagtgggtgggttgatgggtgagaaaaaaaatgaaaaaaaaggg
aaataaaaagaagtttacaaaatttccatattgctttttcaaacatccttagtgttagtt
atcccctcctgatctaacctcacgtacatctccagacatatctatctatctatctatcta
tctatctatctatctatctatctatctatctacctacctacctatgtatctatcaccaat
atttctcctttccccttcatatcacctagtttctactgttctcctttcttaggatccatc
tttcccttccccaccaacagttattttctagtttcttgtctactatagatatactgcaaa
ttaaacacgcaaatcataacatttgttgttaaggtccacatatcagagagaatatgtggc
atttatcgatgtttagattctgtcagtcagctttcaagattactggacatgaggctcctt
acaactcctagttattgtgaatagagttgctatgaacttggttgactgtgtatgtctgta
tcaggaaatgggatcccttgtggggtaaacccagaaagtaataagtttagttcctacagc
gagtcttgtactagtgttcttgggaattgtcacactgatttccataatgACATCACCAAC
TTGCTATCCCT
Primer
(+)GCTGGTTAGGTTTTTGTCATCC
(+)AGGGATAGCAAGTTGGTGATGT


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