Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm2216 ]


Position: chr9:63,756,438-63,761,120 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGCAGATGTCTCCCAGGGATcctgctttggctacagcaagtcagtccttgaagcagctac
tgggttcagcccttccttctgggcagccagaatcttcccacaggcagctcagtagatgga
gttttgtaggtaccagctatctgcttgctgaaagggagactccagtacaggtctagccca
ggctcctgtagaggaggggtagtcaacagtttggtaaagttgcaggagtcagcctgtagg
gggaagtctggggagtagtggggagttctgtgttctgttttttgggggtttttttggttt
ggttggtttggtttttgtttttttcggggttttttgtttgttttgttttgtttttgtttt
tgagacagggtttctctgtgtagccctgactgtcctggaacttactctgtagaccaggct
ggcctcgaactcagaaatccacctgcttctgcctcccaagtgctgggattaaagaagttc
tgtgttcttgaaggaactaggaatggagccactacggagctgctgcttggcatccaaggg
acatatacagggcattttcagctcgaggtaaagtctcaattttccacatcagggaaaatg
atgtggacaaacccttcccacgggaagtgctgtggggactgaaggcaggagagggaaact
ctggaagacagactgagcagcggcagaggttggaagaaagatgagcaactgaagtggcta
ggagggcagagagaagtaggcagatgttaaaacatgcagagtcagaagtcaggaatccag
tagagaggcaccaggtctagttattgatcagagcaatgctacacaagtgtatagcactgt
ccccaaactggacatcccagaccagacagtgctaggattgcttttgttttaaatagctcc
cacctttctgtccatgtttacagaaataactgagaattgaggaaactcttgtttcttgag
cctgtcacataccacatccaccccatcatagtcacacacatgcacacacacacacacaca
cacacacacacacacacacacacacactcaggagcagcaaggagcagcaccttaggtgca
tgcccaatgttgaccaccagagggcgccgccaccatccagcaatgagctgtttaagaacc
cgcccaagcaaggacagccaagcaacttagaaaacctgtctttctgcctcatttcatgtg
ggtgggaaatgagactcaaaaggagaggcgtgagcaaagcaagcaaggaaggaaggagtg
gccacttcaacagttggatacaagcagtgcagtttgaaagtagacactttaagcccagga
atgaggcacctgccccaatgcaggcacacacttgagagttgagactatccttgcttgctg
ttgccgtgatacaacactaatcaaaagcaacttgggggaagaaaagggtttattttgctt
acaggttatagttaatcattaaaggaagccagagcaggagctcaagacaggcacatagag
gcaagaactgaagcagagatcatggaagaaagctgcttactagccttatacagcagggac
ccacctgcctagggatggtaccacccatagtgggcctggccctcttagtcagttatcaag
caagaaaatgccctgtagacatgcccataagccaatctgatggaggccattcttgaattg
aggattcttcttctcaggtgcgccaagatgatgactgatgctgaccatcacagccccacc
tagacaaggaccttcttaccacctgtcaggtcccggcattcccactagggggatactctt
agtcccagccatgcctcggcttttaaactctctctcaacctctcactctctctccatcct
ttaaaccagcccacccaccttcctctgttttgtggctcaagtgagtccctgttccagtgt
cctccaaagcagccccgcaagcttcttgctgcttacaccccccattggcatctgccaccc
ttagagccagcaccagggccagaacagggagaccgaagcccaaactctgtccggccacca
gctcttgtggtggtagggtgtcccactgccctctgcactgtcccttgagactaatagcct
ggacatgcacacatcttgagtccacaatgctcttcctaatatcccttcaggaatagccct
tccttctgtctttgtagggtgctttcagagcctaaaatgaagacatgtagctgctatgtg
ttgcctagcaacaaaccagtgtgtagtccagcatgtacatgatgaacacatatacacaag
ataagtaagatgttgaagtggaaacctaagggttctttggagagtcagttgtgttggatg
gtgttttactggggcaaacacatgaaggagtgttttcctgaagtagacacaggtgaaagg
ctaaggcagactcatgacttactcttctttaccaaagcagacaagatgctctctgaaagc
aagcacgtgaaaggacacgtgatgaaggagtcttcgctaatgatgctcgcgcatggattg
gtctgctttacgttgcattgttgagctccatttgtcaggactccatagagagaaacacac
caaaaacttctggtggtgtgctgcagaaacttcttgccgcttccttggacttcttcatca
ttttccctttggtcaagcacataggccattggaagatcatatgggtagttgggggaaccc
tgggctggagtccagagcctcagacctggttaccatgcatgtcatcaagtgcctttccag
acctcagtgactcatcagactgggacaagaatggccacccagtcaccgcatccaaaccac
acttcacactcgcagtcacaaggaatatatccagaccccattccatacttgcccttacaa
ggaacatacaagggacatgctacgatggcccctattttataggggaggaaactgtcgagg
ggaggttaagtgagagagggaagacatgaccgtcatttcatttcacgaacagtaacatta
tggcactcagagcgtggaggcctttcaagggatggctcagagggaaagagtgcgtgctac
acacgcatgaggccctgagttcaaatccccactggcttgacctcatgggcacctgtattc
ccagtgctgtagtggcagagacaggaagagcttgctggctgccaggctagctccaggcta
ggtgagagatgatgtctcgagggaataagacagagagtgacagagcaggacagctagact
ccgcacgtgcacatggatgggcacacgcgcacacacacacacacacacacgcacacgcac
acgcacacgcacacgcacacgcacactatgcaaggctaggtgtggctcagcacttaggag
gctaaggcatggcaagcttaggtcaggttgaggtgcataacaagattctaccttgaagga
gagagaaggaaggagcacaaacaagatcctaaatactgtatcagacgattcacaggagac
atgcaaatggtcctccaccctctgaaaggcttcctttaacacagcacaaataaaagaaat
gcaaattcaaattgctccaagagaccttctctcgaatatcagattggcataaatccaaac
gtttggcaactctccttcctgggaaggctgcagagaagcaggcactcttacagagagcga
tgggaatgtggaagtggttctgctgggcgtgggggaggcagacgcagagctgttcttttc
tttgcaattatggagactgaacccatggcctcgggcacacgacccaagccctctaccacg
gagcatatccacagagatacatcagccaaatgctcctgggtcaacagaaagcccctaact
gggctggcgagatggctcagcaggtaaaagcactgactgctcttccaaagatcctgagtt
caaatcccacatggtggctcacaaccacccataatgagatctgactccctcttctggtgt
gtctgaagtcagctacagtgttcttatgtacaataataaataaatctttggagttctgag
caagcagggttgaccagagagagcagatgtcctaaaaattcaatttccaacaaccacatg
aaggctcacaaccacctgtacagctacagtgtactcacataaaataaataaataaatctt
aaaaaaagaaaagaaaaagaaagttcctaactgtggtcttatttgtagcagtagctagaa
tcacatgagggacacccatgcgcaggaggcttggcggacaacacaagagaggactttgtg
gctacaatggaactcagggccgggggtggcggcgggatgacaaccaagaaaacaagatat
aggaaagtgtgactacaccttggtctaagaaaagggtcaggatgcgttttaacttgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagggcatgtgtgagtgtaagtccttc
ccctggagctggagttatagagagttctgagtcacccaacaagggcactgaggatagaat
tgggttctctggaagagcaacaagtgttcttaactgctaagccatttctccaatcctagc
aattacactttatagataattaaattaatataagttgaagtaaggataaagtgtaaactt
ttccattaaagtgatgaggaggattgggtaaaggggacgtaaaAAATGGGTCTCTTGGGC
TGG
Primer
(+)AGCAGATGTCTCCCAGGGAT
(+)ccagcccAAGAGACCCATTT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.