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Mouse element [ mm2215 ]


Position: chr9:63,527,079-63,529,488 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAATCCTTCCAGCAGGGAGAtagagttccaaacacagaggcctccagtcagccagatgta
tagtccagcagaagagggtgaccgtgccatcctgtgtaagctgctctcctaaggctaaac
agcttcctggtcaaagcccgagcttgtaaaatagccacttctgaaaacagagtggctgca
agaccaggctctgtctctgagctccaggacactacctatcctacactgagacctccactg
cctccatcctttggctcattctactcagtggcttctccctacccttgtctcttccatctt
aaagtccctactgactccaccaactgacttgagcaagcttcctgcccatctgggccagga
gctcctggtagtaagaaaacccaggtgacctcctgtacttagaagggaaatgggactaat
gggtcatatcgggccagaagtacaccacagccattttattaaaattctcagccatattat
taaaccttgggaggcagaggcaggtggatttctgtgagttccaggccagcctggtctaaa
gagtgagtcccaggacagccatggctacacagaaaaaccctatctcaaaaacaaaccaaa
accagtacataacagaaagctacactcccatatctcagaagatgtaataaatagacaggg
atcagaagccaccctgtagctgttcaagtccaaagaatccacagacacacaacattaggc
tgtcagcagaaatggtccctcaacaagcagctggtctaacatagcagagggttgatagat
ctgggtgctggtcacctgagcaaagccggcagcagcgaagtgctgaggctgcagttcttc
tgtttcttctgttgatgttgttttgttttgttttcttagtatataaaagtttattggggc
tggagagatggttcagcagttaagaacactgactgctcttccagaggtcctgagttcaat
tcccagcaaccacattgtggctcacaaccatctgcaataggatccaatgccctcttctgg
tgtgtctgaagacagctacagtgtattcatatacatacataaataaaatctttacaaaaa
agtttattgaaatctagaaatgaaggtagagtgggggggcagagaaggacagaaagagag
aggagagaggaagagagaaaaaggggaagaggctggccagagacatatggagagaaaaga
gagagagaacagcagatgaaggggggaagaggagaaggaggaggaggaggaggagaaggg
aggaggaagaggatgaggaagaggaggaggagaagggaggaggaagaagaggaaggaaga
ggagggagaggaggaggaggaggaggaggaagaagagatgctgcaattcttttcaatgag
gaagcttgcctgtgtcactcactgtgtccagcagacaaagccacacctgtggctaaggca
caggtggacattggccatgctaggatagttggtaaggtcaaatgttgggccctggcagtc
ctaacaagctaggctctgacaccggttccctgcagccaaccaaagtgtatagttattcaa
tgtgaccacactgggaacaggaacaaataaagatgttcccccgccacacacacacagaca
cacacagacacacacacagagtccatcctcagggacctgaagtttagatttaaatagaag
caagagatgtgcagagctatgcaaccctgctcagggtgtggttccacctgtcactgattt
accctcagctctgggctctccagcaaggtgctctgacaagctgtcagaactgtgtgacaa
ctcttccttctctggctggcaccgagcttgagcttcttccatctctcagtgtgagacctc
tgggaaatgtcactctcttggggtctgttgtataagtagccttgatggccaaagggaagg
gacatggctgtctcttttgatgcctctgttcttgtcaggatggttacagagggacttgca
tccatttacccaaatgatatcaacaactgggcatttcatcaatatccgactcactggcct
ggaaagcacacagacctctggggcagcatcctagagcaggcgtgagtggcaggacctcgg
ctggaagcaagttcagggttttcactcaagccttgctgtccactgatggaggagtctcta
ctaggggtcatctggtccaaaagcaatcagcacaactgctctctattgactctacctctt
agaactttctggcattcccagtatcagggaagaaatgctagccactatgcagtgtgtaga
cactaccttcctcctcctgagtctgcccatcagagtctgagacagcacatacctgaggaa
tcacccctacagaagagggaatgaggaggtgagtgaggccaccttcagaaAGGCCTTTCT
CTCCACATGC
Primer
(+)GAATCCTTCCAGCAGGGAGA
(+)GCATGTGGAGAGAAAGGCCT


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