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Mouse element [ mm2214 ]


Position: chr9:63,524,813-63,527,208 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AACATCCAGGATGCCCACAGcccttggcaatctgatgggcttaggctgccaagagccacc
tataggaaataccccaagacatcccttacattccagagggggtcagaggtggggggtctc
ctgatcaacttgtcaatcacttctcaccctacttgacccaggcctccctctgtgcagctc
aactctccttagaccaaccccaggacacacatcttccaaaatgccttctgggaaatgcgt
taatggtgtggggtgtcacttgggcaaactaaaatgaagcaccagcctgaatcctatata
cccaaaggaatatctcttcctttgaccacatgacaaggtgggcataaaagtagcttttca
gagaaacaggtgtgccaaccttgaatgtagaactcaacaggaaaagaaagaaagaggatg
aggggataagccgagaaatctatccactgttagaaggtctcaagccttcttcctcggaga
agaaagcaggctgccaagtgggccttccactcctaaggacctcaagataaaggcccatct
ttgttctcttcaaaacaagggtaggacactgacagtcactcccacccgattgccagggaa
cttcaatatcaactcacttcaccaaacaaacaattctcctgacaggattcttagtcattc
tgtgttttgttgtcactactcctcaccccccctccctgcatcctctccctccaccccctt
gaagctttcttccatgaagcagaaaccagttaaggactaagtctcctctcacacccctcc
tgcctcctttcccagttctcccgcctcccacctcccttgggtttgcttgaatcaaactat
gaatcacttccgagtaggcaggctgcatgcctgggggttggattttctcttctttctttt
tttttctttcattctttccttcctccttccctcccgccctcaatgcctttcttccaccct
caatgcctttcttcctcccccaccttccttccagagaagattctcacagcccatcagtag
aaggagcagatcaggtggcgatggtggtcttgcctagttttagcaaagccaaccttacag
ctcccaagacataaagagaaaaatataaggtgggcatctgtgacttggagagccagggtg
ggagggggagggaaagagactgggagggagaaagggagggagggaaagtaggaggggagg
gcaaatgaggttttgtgttaactgcagttttgacttccatagttatgagtcagaagccag
agagatagcacagggcccccagtacaacagaggaagttagtgtgtgctgtgcaactcagt
gacactcatgcagagaggtggcccaggacaagggctgcctcagctcttgtttcacaacac
tcttagcaacatccaaacagtacagctgggaaagcgacaatccccatttctaccccattc
cttcttccatggctccactcatgccaaaccagcactctacccactgagccacacacgctc
cgaggccctgttccctacttcaggcagaggcccaaaagtcttgaggagtctctttcccct
gtcccaatgcctcgtgcgtgtgctctcccactcagctaaagtcacaatcctgtggtcatt
tttcgccaacatgaaaatggaacattgagccttgtgcacgctaggcaagcactctgccgc
tgagctacatgtccacctttgggtttctcaaaccttccaacttggctacagacatgagga
ataggcaagagttggggcgctggaaataagataagggacagagatgatcagtttaggatt
tcttatttatttatttatttatttattatttgtttgtcagtgtgtgtgtgtgtgtgtctg
tctgtctgtctgcaagaagagctcactgaatcccttgagccaggattacagattgcactc
acctagcctgggtgctggaatgtgaactcaaatctctccagtcttggaaatgatagattt
ctacatgaagttaagtaccgcagagttcagagaggggctactttgcctataggcgatgtg
gtgtctacgggacttcaccaccagcctcctacctccatgcctcttctttctggatcagag
cagttcccatcctaaattgtagtaaaaaataaggccctgtacgtcccaggctttacagga
caggagagagcatcacagacaacaggcactcctttctgtcccggagaatggacttccaat
aaaacaaaggcagactcatgggggcactctgacctctgacagcaaggaatccttccagca
gggagatagagttccaaacacagaggcctccagtcagccagatgtatagtccagcagaag
agggtgaccgtgccatcctgtgtaagctgctctcctAAGGCTAAACAGCTTCCTGG
Primer
(+)AACATCCAGGATGCCCACAG
(+)CCAGGAAGCTGTTTAGCCTT


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